caporaso-lab / tax-credit-dataLinks
raw data from tax-credit project
☆14Updated 5 years ago
Alternatives and similar repositories for tax-credit-data
Users that are interested in tax-credit-data are comparing it to the libraries listed below
Sorting:
- Make a non-redundant, comprehensive COI database from NCBI and BOLD and include customizing options☆16Updated 3 months ago
- repo for cicese metatranscriptomics workshop, nov 2018☆14Updated 5 years ago
- NCBI taxonomic identifier (taxid) changelog, including taxids deletion, new adding, merge, reuse, and rank/name changes.☆30Updated 3 months ago
- ☆32Updated 7 months ago
- Repository of the integrated mouse gut metagenomic catalog☆20Updated 3 years ago
- A microbial profiling framework for metagenomic analysis☆24Updated 5 years ago
- The is mostly a wrapper tool using phyloseq and microbiome R packages.☆34Updated 2 years ago
- A shiny package for microbiome functional enrichment analysis☆37Updated 4 months ago
- workflows for offline analysis of 16S rRNA Nanopore data☆15Updated 2 years ago
- ShortBRED is a pipeline to take a set of protein sequences, reduce them to a set of unique identifying strings ("markers"), and then sear…☆32Updated 7 months ago
- Qiime2 snakemake pipeline☆19Updated last year
- A containerized bioinformatics pipeline for viral metagenomic data analysis☆35Updated last year
- MetaMLST is a computational tool for in-silico Multi-Locus Sequence Typing from metagenomic data.☆16Updated 2 years ago
- A Nextflow workflow for QC, evaluation, and profiling of metagenomic samples using short- and long-read technologies☆37Updated 2 years ago
- Amplicon sequence processing workflow using QIIME 2 and Snakemake☆47Updated this week
- Profiler for metagenomics based on NGLess☆13Updated last year
- Toolkit for establishing, updating, and validating GTDB species clusters☆21Updated 2 months ago
- Working with the outputs of sourmash in R☆27Updated last year
- Model-based Genomically Informed High-dimensional Predictor of Microbial Community Metabolic Profiles☆38Updated last year
- Download assembly files from NCBI☆12Updated 2 years ago
- Metagenomic species profiling with enhanced coverage of the human gut microbiome☆25Updated last year
- Protocols, data and code associated with the MK-SpikeSeq method for quantifying the absolute abundances of microbiota samples☆13Updated 4 years ago
- AnADAMA2 is the next generation of AnADAMA (Another Automated Data Analysis Management Application). AnADAMA is a tool to capture your wo…☆12Updated last year
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆32Updated last month
- Multilocus sequence typing by blast using the schemes from PubMLST☆30Updated 3 years ago
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆54Updated 2 months ago
- Tools for extracting individual genomes from metagenomes☆17Updated last year
- OPAL: Open-community Profiling Assessment tooL☆30Updated 7 months ago
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome☆49Updated 2 years ago
- FishTaco (Functional Shifts Taxonomic Contributors) is a metagenomic computational framework that aims to identify the driver taxa of mic…☆24Updated 4 years ago