caporaso-lab / tax-credit-data
raw data from tax-credit project
☆14Updated 5 years ago
Alternatives and similar repositories for tax-credit-data:
Users that are interested in tax-credit-data are comparing it to the libraries listed below
- AnADAMA2 is the next generation of AnADAMA (Another Automated Data Analysis Management Application). AnADAMA is a tool to capture your wo…☆12Updated 9 months ago
- Tools for extracting individual genomes from metagenomes☆17Updated last year
- Please use mmgenome2 instead. Tools for extracting individual genomes from metagenomes☆27Updated 7 years ago
- 16S taxonomy assignment using an ecosystem-specific database.☆16Updated 2 years ago
- workflows for offline analysis of 16S rRNA Nanopore data☆13Updated last year
- OPAL: Open-community Profiling Assessment tooL☆28Updated 2 months ago
- Toolkit for establishing, updating, and validating GTDB species clusters☆20Updated 4 months ago
- The is mostly a wrapper tool using phyloseq and microbiome R packages.☆34Updated 2 years ago
- MAG Circularization Method☆33Updated 2 years ago
- Ley Lab MetaGenome Profiler DataBase generator☆49Updated 2 years ago
- Model-based Genomically Informed High-dimensional Predictor of Microbial Community Metabolic Profiles☆35Updated last year
- Working with the outputs of sourmash in R☆26Updated last year
- ☆29Updated 2 months ago
- ☆20Updated 8 years ago
- Snakemake pipeline for simulating shotgun metagenomic samples☆22Updated 2 months ago
- Reproducible Analyses accompanying DADA2 + PacBio Manuscript☆33Updated 4 years ago
- Improvement of metagenome-assembled genomes☆50Updated 5 years ago
- Metagenomics-related extended functionalities to samtools☆21Updated last year
- Strain-level abundances estimation in metagenomic samples using variation graphs☆25Updated 2 years ago
- Dadaist2 🟨 Highway to R☆13Updated 3 weeks ago
- repo for cicese metatranscriptomics workshop, nov 2018☆14Updated 5 years ago
- Tool for constructing phylogenies and summarizing metabolic characteristics based on curated and custom profile HMMs☆18Updated 3 years ago
- Make a non-redundant, comprehensive COI database from NCBI and BOLD and include customizing options☆13Updated 5 months ago
- ☆23Updated 6 years ago
- Phylogeny Enhanded Prediction of PAN-genome☆40Updated 4 years ago
- From genomes to phenotypes: Traitar3, the microbial trait analyzer (for Python3)☆22Updated 8 months ago
- ShortBRED is a pipeline to take a set of protein sequences, reduce them to a set of unique identifying strings ("markers"), and then sear…☆28Updated 2 months ago
- A simple nextflow pipeline for running kraken2 and bracken in a docker container☆20Updated 4 years ago
- 🍊 💫 Trim, circularise and orient long read bacterial genome assemblies☆26Updated 5 years ago
- BinaRena: Interactive Visualization and Binning of Metagenomic Contigs☆31Updated 7 months ago