caporaso-lab / tax-credit-dataView external linksLinks
raw data from tax-credit project
☆14Sep 19, 2019Updated 6 years ago
Alternatives and similar repositories for tax-credit-data
Users that are interested in tax-credit-data are comparing it to the libraries listed below
Sorting:
- Scripts for reproducing results shown in Gupta VK et al. "A Predictive Index for Health Status using Species-level Gut Microbiome Profili…☆36Sep 23, 2020Updated 5 years ago
- Automated pipeline for amplicon sequence analysis☆11Nov 25, 2025Updated 2 months ago
- A public resource for microbiome bioinformatics benchmarking using artificially constructed (i.e., mock) communities.☆83May 14, 2019Updated 6 years ago
- ☆10Feb 21, 2020Updated 5 years ago
- Profiler for metagenomics based on NGLess☆13Feb 22, 2024Updated last year
- akutils with massive updates over v1.1 to functionality and command line interface.☆15Jun 25, 2019Updated 6 years ago
- Protein orthologous group assignment with deep learning☆28Dec 16, 2025Updated 2 months ago
- Make a non-redundant, comprehensive COI database from NCBI and BOLD and include customizing options☆16May 26, 2025Updated 8 months ago
- A set of scripts to help automate the construction of data sets for multi-gene phylogenetic analyses.☆13Mar 13, 2019Updated 6 years ago
- ☆16Dec 26, 2022Updated 3 years ago
- ☆17Nov 19, 2024Updated last year
- wiki for the mothur software package☆20Jul 14, 2025Updated 7 months ago
- Generate de novo taxonomy of full length 16S rRNA sequences directly from environmental samples☆20Nov 23, 2024Updated last year
- Metagenomic profiling and phylogenetic distances via common kmers☆42Jul 12, 2021Updated 4 years ago
- Minhash and maxhash library in Python, combining flexibility, expressivity, and performance.☆22Dec 14, 2024Updated last year
- Sample search by metadata and features☆47Aug 31, 2023Updated 2 years ago
- Parallel implementation of OrthoMCL☆21Aug 26, 2022Updated 3 years ago
- Toolkit for establishing, updating, and validating GTDB species clusters☆20Oct 22, 2025Updated 3 months ago
- R package for downstream analysis for anacapa eDNA pipeline☆22Dec 10, 2021Updated 4 years ago
- https://gdancik.github.io/shinyGEO/☆25Apr 13, 2021Updated 4 years ago
- OrthoFiller: Identifying missing annotations for evolutionarily conserved genes.☆22Dec 1, 2022Updated 3 years ago
- k-SLAM ultra fast alignment and taxonomic classification of metagenomic datasets☆23Nov 18, 2018Updated 7 years ago
- CroCoDeEL is a tool that detects cross-sample contamination in shotgun metagenomic data☆26Feb 9, 2026Updated last week
- A Cytoscape app for importing KGML(KEGG pathway XML)☆25Mar 8, 2025Updated 11 months ago
- Ready-made Taxonomic Weights Repository☆26Mar 31, 2022Updated 3 years ago
- Implementation of BLAST(Basic Local Alignment Search Tool) algorithm in Python 3.5 using Numpy.☆22Apr 14, 2018Updated 7 years ago
- A microbial profiling framework for metagenomic analysis☆24Apr 9, 2020Updated 5 years ago
- Graph-based representation learning method for protein function prediction☆24Aug 25, 2025Updated 5 months ago
- Repository containing scripts and files for 16S gene community analysis chapter in Methods in Molecular Biology☆25May 22, 2019Updated 6 years ago
- a simple read-only sequence database, designed for short reads☆20Dec 19, 2016Updated 9 years ago
- Snakemake pipeline for downstream analysis of metagenome-assembled genomes (MAGs) (pronounced mag-pie)☆61Apr 1, 2023Updated 2 years ago
- R Interface to the NCBI SRA metadata☆23Nov 19, 2018Updated 7 years ago
- R shiny app for interactive microbiome analysis☆56Jun 5, 2025Updated 8 months ago
- A package for creating and managing sample identifiers in comparative -omics datasets.☆23Jan 30, 2017Updated 9 years ago
- A Linear Discriminant Analysis Effect Size (LEfSe) wrapper.☆26Feb 2, 2017Updated 9 years ago
- PARTIE is a program to partition sequence read archive (SRA) metagenomics data into amplicon and shotgun data sets. The user-supplied ann…☆25Feb 25, 2023Updated 2 years ago
- NCBI taxonomic identifier (taxid) changelog, including taxids deletion, new adding, merge, reuse, and rank/name changes.☆28May 6, 2025Updated 9 months ago
- Bash pipeline for analysis of ONT full-length 16S sequences in QIIME2☆29Feb 3, 2020Updated 6 years ago
- Efficient and fast querying and parsing of GTDB's data☆29Aug 21, 2025Updated 5 months ago