caporaso-lab / tax-credit-dataLinks
raw data from tax-credit project
☆14Updated 6 years ago
Alternatives and similar repositories for tax-credit-data
Users that are interested in tax-credit-data are comparing it to the libraries listed below
Sorting:
- Make a non-redundant, comprehensive COI database from NCBI and BOLD and include customizing options☆16Updated 6 months ago
- Repository of the integrated mouse gut metagenomic catalog☆20Updated 3 years ago
- Profiler for metagenomics based on NGLess☆13Updated last year
- Toolkit for establishing, updating, and validating GTDB species clusters☆20Updated last month
- AnADAMA2 is the next generation of AnADAMA (Another Automated Data Analysis Management Application). AnADAMA is a tool to capture your wo…☆12Updated 3 months ago
- Scalable creating/updating of metagenome profiling databases☆62Updated 5 months ago
- ☆16Updated 2 years ago
- OPAL: Open-community Profiling Assessment tooL☆29Updated 10 months ago
- ☆32Updated 11 months ago
- ShortBRED is a pipeline to take a set of protein sequences, reduce them to a set of unique identifying strings ("markers"), and then sear…☆31Updated 10 months ago
- repo for cicese metatranscriptomics workshop, nov 2018☆14Updated 5 years ago
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆54Updated 5 months ago
- MinPath (Minimal set of Pathways) is a parsimony approach for biological pathway reconstructions using protein family predictions, achiev…☆23Updated 4 years ago
- Computational workflows for metagenomics tasks, by the Bhatt lab☆47Updated 2 years ago
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆46Updated 2 years ago
- Dadaist2 🟨 Highway to R☆13Updated 9 months ago
- A shiny package for microbiome functional enrichment analysis☆38Updated this week
- Model-based Genomically Informed High-dimensional Predictor of Microbial Community Metabolic Profiles☆41Updated last year
- Metagenomic species profiling with enhanced coverage of the human gut microbiome☆25Updated last year
- Multilocus sequence typing by blast using the schemes from PubMLST☆30Updated 3 years ago
- Unsupervised Clustering of Environmental Microbial Assemblies Using Coverage and Affinity Propagation☆31Updated 4 years ago
- Ley Lab MetaGenome Profiler DataBase generator☆50Updated 3 years ago
- Metagenomic Intra-Species Diversity Analysis (MIDAS)☆40Updated last year
- ☆41Updated 8 years ago
- A microbial profiling framework for metagenomic analysis☆24Updated 5 years ago
- Database of genomes integrated from the gut microbiome and other environments☆45Updated 2 years ago
- A program for degenerate primer design for broad taxonomic-range PCR for microbial ecology studies☆32Updated 2 years ago
- FishTaco (Functional Shifts Taxonomic Contributors) is a metagenomic computational framework that aims to identify the driver taxa of mic…☆24Updated 4 years ago
- workflows for offline analysis of 16S rRNA Nanopore data☆16Updated 2 years ago
- MAG Circularization Method☆32Updated last month