Chimera: An easy to use pipeline for Genome based Metabolic Network reconstruction, evaluation and visualization.
☆19Oct 21, 2022Updated 3 years ago
Alternatives and similar repositories for chimera
Users that are interested in chimera are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Higher-Order Co-occurrence☆12Nov 9, 2021Updated 4 years ago
- mergem is a python package and command-line tool for merging, comparing, and translating genome-scale metabolic models☆14Aug 20, 2025Updated 9 months ago
- Teaching materials for SymbNET course: from MAGs to GEMs☆15Jan 8, 2024Updated 2 years ago
- SMETANA: a tool to analyse interactions in microbial communities☆70May 6, 2025Updated last year
- CarveMe: genome-scale metabolic model reconstruction☆208Sep 12, 2025Updated 9 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Supplementary data for co-occurrence manuscript☆10Dec 19, 2019Updated 6 years ago
- Pipelines used in the lab.☆15Mar 26, 2025Updated last year
- Inference of microbial interaction networks from large-scale heterogeneous abundance data☆92Oct 9, 2025Updated 8 months ago
- agent based modelling☆37Aug 28, 2024Updated last year
- ReFramed: metabolic modeling package☆64May 4, 2026Updated last month
- ☆24Oct 11, 2024Updated last year
- An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within micro…☆266May 13, 2026Updated last month
- Python package to study microbial communities using metabolic modeling.☆131Jun 8, 2026Updated last week
- ☆26Dec 9, 2022Updated 3 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- ☆11Feb 20, 2026Updated 3 months ago
- ☆24Oct 19, 2023Updated 2 years ago
- Predict oxygen, temperature, salinity, and pH preferences of bacteria and archaea from a genome☆70Mar 16, 2026Updated 3 months ago
- Variational Auto Encoders for learning binding signatures of transcription factors☆14Mar 14, 2024Updated 2 years ago
- Automated synthetic microbial Community Design☆13Mar 26, 2021Updated 5 years ago
- Parse NCBI CD-search results to find and visualise the domain architecture of secondary metabolite synthases☆25Nov 9, 2022Updated 3 years ago
- Package that facilitates pulling database entries from KEGG via its REST API☆12Jun 9, 2026Updated last week
- Instantaneous Metagenome Taxonomic Profiling with MetaKSSD☆25Nov 3, 2025Updated 7 months ago
- An integrated visual environment for metabolic modeling methods such as FBA, FVA and Elementary Flux Modes, and advanced features such as…☆67May 28, 2026Updated 3 weeks ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- A Hierarchical Approach to Pangenomics Inference☆13Apr 15, 2024Updated 2 years ago
- a pipeline to cluster proteins into families☆10Apr 1, 2020Updated 6 years ago
- Uncover organisms' metabolic blueprints☆17Jun 18, 2024Updated 2 years ago
- A container for all enzyme constrained models created by GECKO.☆17Jul 4, 2022Updated 3 years ago
- ☆16Jan 12, 2026Updated 5 months ago
- A QIIME 2 plugin for interaction with the Greengenes2 database☆33Oct 1, 2024Updated last year
- Python interface for running COMETS simulations and analyzing the results☆16May 19, 2026Updated 3 weeks ago
- A standalone program that reads files created with the graphical network editor Escher and converts them to files in community standard f…☆16Mar 4, 2026Updated 3 months ago
- Constraint-Based Reconstruction and EXascale Analysis☆46Oct 23, 2024Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Analyzer of Gene and Species Trees☆11Aug 8, 2016Updated 9 years ago
- memote – the genome-scale metabolic model test suite☆146Aug 14, 2025Updated 10 months ago
- Tree Health and Plant Biosecurity Initiative - Phytophthora ITS1 Classifier Tool☆10Jun 10, 2026Updated last week
- Qiime2 snakemake pipeline☆20Dec 21, 2023Updated 2 years ago
- Build-A-Cell protocol for making liposomes☆13Jan 30, 2024Updated 2 years ago
- Software tool for metabolic modelling in Systems Biology☆10Dec 30, 2020Updated 5 years ago
- Drawing 'dendrogram' using 'ggtree'☆13Apr 29, 2026Updated last month