Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.
☆54Jun 14, 2025Updated 9 months ago
Alternatives and similar repositories for lotus2
Users that are interested in lotus2 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Dadaist2 🟨 Highway to R☆13Mar 7, 2025Updated last year
- motus - a tool for marker gene-based OTU (mOTU) profiling☆173Mar 13, 2026Updated 3 weeks ago
- ☆10May 14, 2025Updated 10 months ago
- Simple statistical identification and removal of contaminants in marker-gene and metagenomics sequencing data☆170Sep 4, 2025Updated 7 months ago
- Antimicrobial Resistance Analysis☆10Jun 11, 2024Updated last year
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- ☆22Oct 9, 2025Updated 6 months ago
- Woltka: a versatile meta'omic data classifier☆77Sep 8, 2025Updated 7 months ago
- Amplicon sequencing analysis workflow using DADA2 and QIIME2☆242Updated this week
- workflows for offline analysis of 16S rRNA Nanopore data☆16Jun 13, 2023Updated 2 years ago
- (Meta-)genome screening for functional and natural product gene sequences☆103Mar 30, 2026Updated 2 weeks ago
- Tools for visualising microbial community amplicon data☆72Nov 3, 2025Updated 5 months ago
- UFCG: Universal Fungal Core Genes☆36Jul 29, 2025Updated 8 months ago
- Orchestrating Microbiome Analysis☆108Mar 26, 2026Updated 2 weeks ago
- Tools for analyzing trees☆13Apr 16, 2025Updated 11 months ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.☆126Oct 30, 2023Updated 2 years ago
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆618Feb 18, 2026Updated last month
- Statistics and visualization for amplicon data☆74Apr 25, 2023Updated 2 years ago
- Microbial ecological network visualization clustering☆145Nov 20, 2025Updated 4 months ago
- Perl script for simulating PCR reactions. Extract sequences from a query based on primer sequences.☆49Apr 2, 2025Updated last year
- Mycobacterium tuberculosis genomic analysis from Nanopore sequencing data☆14Jun 12, 2024Updated last year
- Bacterial analysis toolbox for full ESKAPE pathogen characterization and profiling the resistome, mobilome, virulome & phylogenomics usin…☆26Jan 30, 2025Updated last year
- FROGS is a galaxy/CLI workflow designed to produce an OTUs count matrix from high depth sequencing amplicon data.☆37Mar 24, 2026Updated 2 weeks ago
- ☆81Updated this week
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Reorients assembled microbial sequences☆136Aug 21, 2025Updated 7 months ago
- ☆18May 4, 2023Updated 2 years ago
- An R package for visualizing confounder control in meta-analyses☆11Jan 17, 2023Updated 3 years ago
- Generate de novo taxonomy of full length 16S rRNA sequences directly from environmental samples☆20Nov 23, 2024Updated last year
- ☆38Dec 6, 2023Updated 2 years ago
- GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and me…☆25Feb 6, 2023Updated 3 years ago
- ☆11Apr 5, 2021Updated 5 years ago
- A Meta-barcoding pipeline for analysing ONT data in QIIME2 framework☆127Jan 8, 2026Updated 3 months ago
- Amplicon sequence processing workflow using QIIME 2 and Snakemake☆45Mar 16, 2026Updated 3 weeks ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- Standard tools and protocols for MiSeq amplicon sequencing of 16S rRNA genes☆10Nov 14, 2022Updated 3 years ago
- An R package for Partial Least Squares analysis and plotting for (high dimensional) compositional data☆20Apr 18, 2022Updated 3 years ago
- Raspir, the rare species identifier☆11Oct 19, 2023Updated 2 years ago
- Fit LOg-RAtio Lasso regression for compositional covariates☆15Feb 8, 2026Updated 2 months ago
- Network construction, analysis, and comparison for microbial compositional data☆176Dec 18, 2025Updated 3 months ago
- A flexible pipeline for complete analysis of bacterial genomes☆502Updated this week
- A robust and fast clustering method for amplicon-based studies☆30Mar 23, 2023Updated 3 years ago