hildebra / lotus2Links
Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.
☆54Updated last month
Alternatives and similar repositories for lotus2
Users that are interested in lotus2 are comparing it to the libraries listed below
Sorting:
- A microbiome analysis toolkit for R☆24Updated last year
- The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or t…☆72Updated 2 years ago
- MaAsLin3: Microbiome Multivariate Association with Linear Models☆41Updated last month
- Parse NCBI taxonomy and accessions to find taxonomic assignments☆77Updated 2 weeks ago
- Metagenomics-related extended functionalities to samtools☆21Updated 2 years ago
- Course materials for the Genomics Aotearoa Metagenomics Summer School, to be hosted at the University of Auckland in Septermber☆62Updated 11 months ago
- gutSMASH☆55Updated 7 months ago
- Reproducible Analyses accompanying DADA2 + PacBio Manuscript☆32Updated 4 years ago
- R implementation of the LEfSe method☆59Updated 3 months ago
- ☆56Updated last week
- Compare different differential abundance and expression methods☆51Updated 3 years ago
- SHallow shOtGUN profiler☆54Updated 3 years ago
- Snakemake pipeline calculating KEGG orthologue abundance in metagenomic sequence data.☆24Updated 10 months ago
- An R package designed for drawing gene arrow maps☆84Updated 2 weeks ago
- Semi-parametric Rank-Based Correlation and Partial Correlation Estimation for Quantitative Microbiome Data☆24Updated 3 years ago
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆45Updated last year
- ☆41Updated 7 years ago
- A set of R scripts for the analysis of microbial profiles☆41Updated last year
- Amplicon sequencing workflow heavily using DADA2 and implemented in snakemake☆49Updated last year
- Functions for compositional analysis of high throughput sequencing☆29Updated last year
- Statistical analysis for sparse high-throughput sequencing☆69Updated 7 months ago
- ☆31Updated 7 months ago
- General procedure for making QIIME 2 compatible SILVA reference files☆20Updated 10 months ago
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆32Updated 2 weeks ago
- ☆41Updated 4 years ago
- Metagenomics Workshop☆28Updated 8 years ago
- A shiny package for microbiome functional enrichment analysis☆37Updated 3 months ago
- BEAV: Bacterial Element Annotation reVamped☆66Updated 9 months ago
- Track, Analyze, Visualize: Unravel Your Microbiome's Temporal Pattern with MicrobiomeStat☆43Updated last week
- Batch effects removal for microbiome data via conditional quantile regression☆31Updated 2 years ago