Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.
β54Jun 14, 2025Updated last year
Alternatives and similar repositories for lotus2
Users that are interested in lotus2 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Dadaist2 π¨ Highway to Rβ13Mar 7, 2025Updated last year
- motus - a tool for marker gene-based OTU (mOTU) profilingβ184Jul 17, 2026Updated last month
- β11May 14, 2025Updated last year
- Meteor is a plateform for quantitative metagenomics profiling of complex ecosystems. Meteor relies on genes catalogue to perform species-β¦β42Apr 7, 2026Updated 4 months ago
- β22Oct 9, 2025Updated 10 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer β’ AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Simple statistical identification and removal of contaminants in marker-gene and metagenomics sequencing dataβ175Sep 4, 2025Updated 11 months ago
- Antimicrobial Resistance Analysisβ10Jun 11, 2024Updated 2 years ago
- Woltka: a versatile meta'omic data classifierβ81Sep 8, 2025Updated 11 months ago
- workflows for offline analysis of 16S rRNA Nanopore dataβ17Jun 13, 2023Updated 3 years ago
- Amplicon sequencing analysis workflow using DADA2 and QIIME2β259Aug 20, 2026Updated last week
- Tools for visualising microbial community amplicon dataβ74Nov 3, 2025Updated 9 months ago
- UFCG: Universal Fungal Core Genesβ36Jul 29, 2025Updated last year
- Bacterial analysis toolbox for full ESKAPE pathogen characterization and profiling the resistome, mobilome, virulome & phylogenomics usinβ¦β27Jan 30, 2025Updated last year
- Orchestrating Microbiome Analysisβ111Aug 8, 2026Updated 3 weeks ago
- AI Agents on DigitalOcean Gradient AI Platform β’ AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Tools for analyzing treesβ13Apr 16, 2025Updated last year
- A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.β129Oct 30, 2023Updated 2 years ago
- (Meta-)genome screening for functional and natural product gene sequencesβ118Updated this week
- Statistics and visualization for amplicon dataβ74May 21, 2026Updated 3 months ago
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmidsβ670Aug 7, 2026Updated 3 weeks ago
- Microbial ecological network visualization clusteringβ155Nov 20, 2025Updated 9 months ago
- Perl script for simulating PCR reactions. Extract sequences from a query based on primer sequences.β52Apr 2, 2025Updated last year
- Mycobacterium tuberculosis genomic analysis from Nanopore sequencing dataβ15Jun 5, 2026Updated 2 months ago
- FROGS is a galaxy/CLI workflow designed to produce an OTUs count matrix from high depth sequencing amplicon data.β37Mar 24, 2026Updated 5 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer β’ AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Amplicon sequence processing workflow using QIIME 2 and Snakemakeβ46Jul 27, 2026Updated last month
- Reorients assembled microbial sequencesβ145Jun 30, 2026Updated 2 months ago
- β19May 4, 2023Updated 3 years ago
- A comprehensive prokaryotic genome annotation pipelineβ91Aug 18, 2026Updated 2 weeks ago
- A Meta-barcoding pipeline for analysing ONT data in QIIME2 frameworkβ129Jan 8, 2026Updated 7 months ago
- β37Dec 6, 2023Updated 2 years ago
- β98Apr 5, 2026Updated 4 months ago
- An R package for visualizing confounder control in meta-analysesβ11Jan 17, 2023Updated 3 years ago
- β13Apr 5, 2021Updated 5 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer β’ AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Generate de novo taxonomy of full length 16S rRNA sequences directly from environmental samplesβ20Nov 23, 2024Updated last year
- GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and meβ¦β28Feb 6, 2023Updated 3 years ago
- β15Feb 6, 2020Updated 6 years ago
- A flexible pipeline for complete analysis of bacterial genomesβ522Aug 5, 2026Updated 3 weeks ago
- Standard tools and protocols for MiSeq amplicon sequencing of 16S rRNA genesβ10Nov 14, 2022Updated 3 years ago
- An R package for Partial Least Squares analysis and plotting for (high dimensional) compositional dataβ19Apr 18, 2022Updated 4 years ago
- Network construction, analysis, and comparison for microbial compositional dataβ182Jul 7, 2026Updated last month