Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.
☆54Jun 14, 2025Updated last year
Alternatives and similar repositories for lotus2
Users that are interested in lotus2 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Dadaist2 🟨 Highway to R☆13Mar 7, 2025Updated last year
- motus - a tool for marker gene-based OTU (mOTU) profiling☆186Jul 17, 2026Updated 2 months ago
- ☆11May 14, 2025Updated last year
- Meteor is a plateform for quantitative metagenomics profiling of complex ecosystems. Meteor relies on genes catalogue to perform species-…☆43Updated this week
- ☆22Sep 18, 2026Updated 3 weeks ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Simple statistical identification and removal of contaminants in marker-gene and metagenomics sequencing data☆175Sep 4, 2025Updated last year
- Antimicrobial Resistance Analysis☆10Jun 11, 2024Updated 2 years ago
- Woltka: a versatile meta'omic data classifier☆80Sep 8, 2025Updated last year
- workflows for offline analysis of 16S rRNA Nanopore data☆17Jun 13, 2023Updated 3 years ago
- Amplicon sequencing analysis workflow using DADA2 and QIIME2☆262Updated this week
- Tools for visualising microbial community amplicon data☆74Nov 3, 2025Updated 11 months ago
- UFCG: Universal Fungal Core Genes☆37Jul 29, 2025Updated last year
- Bacterial analysis toolbox for full ESKAPE pathogen characterization and profiling the resistome, mobilome, virulome & phylogenomics usin…☆27Jan 30, 2025Updated last year
- Orchestrating Microbiome Analysis☆112Sep 28, 2026Updated last week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Tools for analyzing trees☆13Apr 16, 2025Updated last year
- A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.☆131Oct 30, 2023Updated 2 years ago
- (Meta-)genome screening for functional and natural product gene sequences☆119Updated this week
- Statistics and visualization for amplicon data☆74May 21, 2026Updated 4 months ago
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆683Updated this week
- Microbial ecological network visualization clustering☆156Sep 29, 2026Updated last week
- Perl script for simulating PCR reactions. Extract sequences from a query based on primer sequences.☆53Apr 2, 2025Updated last year
- Mycobacterium tuberculosis genomic analysis from Nanopore sequencing data☆15Jun 5, 2026Updated 4 months ago
- FROGS is a galaxy/CLI workflow designed to produce an OTUs count matrix from high depth sequencing amplicon data.☆37Mar 24, 2026Updated 6 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Amplicon sequence processing workflow using QIIME 2 and Snakemake☆47Updated this week
- Reorients assembled microbial sequences☆145Jun 30, 2026Updated 3 months ago
- ☆19May 4, 2023Updated 3 years ago
- A comprehensive prokaryotic genome annotation pipeline☆92Sep 4, 2026Updated last month
- A Meta-barcoding pipeline for analysing ONT data in QIIME2 framework☆129Jan 8, 2026Updated 9 months ago
- ☆37Dec 6, 2023Updated 2 years ago
- ☆99Apr 5, 2026Updated 6 months ago
- An R package for visualizing confounder control in meta-analyses☆11Jan 17, 2023Updated 3 years ago
- ☆13Apr 5, 2021Updated 5 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Generate de novo taxonomy of full length 16S rRNA sequences directly from environmental samples☆20Nov 23, 2024Updated last year
- GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and me…☆29Feb 6, 2023Updated 3 years ago
- ☆15Feb 6, 2020Updated 6 years ago
- A flexible pipeline for complete analysis of bacterial genomes☆522Aug 5, 2026Updated 2 months ago
- Standard tools and protocols for MiSeq amplicon sequencing of 16S rRNA genes☆10Nov 14, 2022Updated 3 years ago
- An R package for Partial Least Squares analysis and plotting for (high dimensional) compositional data☆19Apr 18, 2022Updated 4 years ago
- Network construction, analysis, and comparison for microbial compositional data☆180Jul 7, 2026Updated 3 months ago