Repository containing scripts and files for 16S gene community analysis chapter in Methods in Molecular Biology
☆25May 22, 2019Updated 7 years ago
Alternatives and similar repositories for mimb_16S
Users that are interested in mimb_16S are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- mapping files for MetaCyc pathway☆13Sep 14, 2019Updated 6 years ago
- **DEFUNCT** dada2-based Nextflow pipeline for multiple amplicon data. See website for up-to-date version☆20Nov 1, 2019Updated 6 years ago
- Quantitative Microbiome Profiling☆15Mar 13, 2021Updated 5 years ago
- General procedure for making QIIME 2 compatible SILVA reference files☆20Oct 3, 2024Updated last year
- Pipeline for computing OTU tables from 16S or ITS amplicon sequencing data.☆34Jun 18, 2023Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- High throughput sequencing -- Amplicon sequencing, mainly include 16S, 18S and ITS for microbiome analysis☆15Jan 16, 2023Updated 3 years ago
- 16s Qiime2 pipeline☆17Sep 26, 2018Updated 7 years ago
- A quick workflow to get researchers started with the bioinformatic pipeline used in the Environmental Metagenomics program.☆13Feb 17, 2025Updated last year
- Automated pipeline for amplicon sequence analysis☆11Nov 25, 2025Updated 7 months ago
- Archive of original RNAseq.wiki tutorial that accompanied PLoS Comp Bio paper☆13Nov 13, 2016Updated 9 years ago
- ggplots for nested data☆10Jul 17, 2024Updated 2 years ago
- Integrated Network Analysis Pipeline☆19Dec 19, 2024Updated last year
- Statistics and visualization for amplicon data☆74May 21, 2026Updated 2 months ago
- Bioinformatics Algorithms☆16Dec 17, 2013Updated 12 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Mapping NCBI Genbank accession to GTDB accession☆14Feb 13, 2021Updated 5 years ago
- Repository of the integrated mouse gut metagenomic catalog☆20Mar 14, 2022Updated 4 years ago
- Data, scripts, and lectures for the Introduction to Metagenomics Summer Workshop 2019.☆36Jul 15, 2019Updated 7 years ago
- Generate de novo taxonomy of full length 16S rRNA sequences directly from environmental samples☆20Nov 23, 2024Updated last year
- A snakemake workflow for metagenomic projects☆15Feb 16, 2023Updated 3 years ago
- A repository of bioinformatic scripts, SOPs, and tutorials for analyzing microbiome data.☆460Feb 13, 2026Updated 5 months ago
- an R package to biotype a community☆14Oct 19, 2021Updated 4 years ago
- R shiny app for interactive microbiome analysis☆55Jun 5, 2025Updated last year
- ☆40Jan 17, 2023Updated 3 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- SourceTracker2☆92Jul 10, 2024Updated 2 years ago
- Binning Virus Genomes from Metagenomes☆75Jul 13, 2022Updated 4 years ago
- 网页截图，支持Video截图☆15Oct 31, 2018Updated 7 years ago
- ☆21Feb 13, 2020Updated 6 years ago
- Standard tools and protocols for MiSeq amplicon sequencing of 16S rRNA genes☆10Nov 14, 2022Updated 3 years ago
- A containerized bioinformatics pipeline for viral metagenomic data analysis☆39Apr 9, 2026Updated 3 months ago
- Database of genomes integrated from the gut microbiome and other environments☆46Feb 3, 2023Updated 3 years ago
- Code and analysis results for the CRC shotgun meta-analysis☆41Sep 28, 2022Updated 3 years ago
- A short tutorial for Tax4Fun2☆26Aug 24, 2024Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- raw data from tax-credit project☆14Sep 19, 2019Updated 6 years ago
- This repository contains scripts used in the manuscript "Massive expansion of human gut bacteriophage diversity"☆20Feb 3, 2021Updated 5 years ago
- repo for cicese metatranscriptomics workshop, nov 2018☆14Jan 22, 2020Updated 6 years ago
- ☆16Jun 18, 2020Updated 6 years ago
- Qiime2 snakemake pipeline☆20Dec 21, 2023Updated 2 years ago
- MinPath (Minimal set of Pathways) is a parsimony approach for biological pathway reconstructions using protein family predictions, achiev…☆25Jun 9, 2021Updated 5 years ago
- ☆22Jul 2, 2020Updated 6 years ago