Alternatives and similar repositories for RibDif:

Users that are interested in RibDif are comparing it to the libraries listed below

• ohlab / SMEG
  Strain-level Metagenomic Estimation of Growth rate (SMEG) measures growth rates of microbial strains from complex metagenomic dataset
  ☆20Updated 4 years ago
• chrisquince / STRONG
  Strain Resolution ON Graphs
  ☆47Updated last year
• aweimann / traitar
  ☆22Updated 2 years ago
• pereiramemo / BiG-MEx
  BiG-MEx implementation as Docker images and R packages
  ☆13Updated 3 years ago
• AlexanderLabWHOI / EUKulele
  Automatic eukaryotic taxonomic classification
  ☆28Updated 2 weeks ago
• elizabethmcd / metabolisHMM
  Tool for constructing phylogenies and summarizing metabolic characteristics based on curated and custom profile HMMs
  ☆18Updated 3 years ago
• lmlui / Jorg
  MAG Circularization Method
  ☆33Updated 2 years ago
• mblstamps / stamps2022
  Materials for the STAMPS 2022 course at the MBL in Woods Hole, MA, USA
  ☆21Updated 2 years ago
• alexmsalmeida / metamap
  Snakemake workflow to map and quantify microbial genomes in metagenomic reads
  ☆12Updated last year
• WatsonLab / KOunt
  Snakemake pipeline calculating KEGG orthologue abundance in metagenomic sequence data.
  ☆24Updated 7 months ago
• EBI-Metagenomics / kegg-pathways-completeness-tool
  ☆20Updated 3 months ago
• functional-dark-side / agnostos-wf
  ☆45Updated last year
• gavinmdouglas / POMS
  Phylogenetic Organization of Metagenomic Signals (POMS)
  ☆19Updated 2 years ago
• FredHutch / gig-map
  Build a map of genes present across a set of microbial genomes
  ☆14Updated 2 weeks ago
• metasnv-tool / metaSNV
  MetaSNV, a metagenomic SNV calling pipeline.
  ☆20Updated 3 years ago
• nick-youngblut / traitar3
  From genomes to phenotypes: Traitar3, the microbial trait analyzer (for Python3)
  ☆22Updated 10 months ago
• biobakery / shortbred
  ShortBRED is a pipeline to take a set of protein sequences, reduce them to a set of unique identifying strings ("markers"), and then sear…
  ☆28Updated 3 months ago
• Kalan-Lab / lsaBGC
  lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters
  ☆37Updated 3 weeks ago
• raphael-upmc / proteinClusteringPipeline
  a pipeline to cluster proteins into families
  ☆9Updated 5 years ago
• Finn-Lab / SanntiS
  SMBGC Annotation using Neural Networks Trained on Interpro Signatures
  ☆27Updated last month
• agmcfarland / GeneGrouper
  CLI tool for finding gene clusters in many genomes and placing them in discrete groups based on gene content similarity.
  ☆17Updated 6 months ago
• AlexanderLabWHOI / eukrhythmic
  A metatranscriptomic pipeline optimized for the study of microeukaryotes.
  ☆16Updated 5 months ago
• leylabmpi / SynTracker
  SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…
  ☆29Updated 3 months ago
• Gibbons-Lab / medi
  Metagenomic Estimation of Dietary Intake and Content.
  ☆29Updated 3 weeks ago
• mgtools / MinPath
  MinPath (Minimal set of Pathways) is a parsimony approach for biological pathway reconstructions using protein family predictions, achiev…
  ☆21Updated 3 years ago
• Magdoll / MagPhase
  Phasing for metagenomics using PacBio long reads
  ☆17Updated 3 years ago
• snayfach / MAGpurify
  Improvement of metagenome-assembled genomes
  ☆52Updated 5 years ago
• Arcadia-Science / sourmashconsumr
  Working with the outputs of sourmash in R
  ☆27Updated last year
• thh32 / Protologger
  Protologgger is a tool for the description of novel taxa by providing taxonomic, functional and ecological insights
  ☆14Updated last year
• ZhaoXM-Lab / metaMIC
  Assessing and Improving the quality of metagenomic assemblies
  ☆28Updated 3 years ago