☆13Nov 28, 2018Updated 7 years ago
Alternatives and similar repositories for pipelines
Users that are interested in pipelines are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆11Feb 16, 2021Updated 5 years ago
- REcombination BARcode detector.☆17Apr 2, 2024Updated 2 years ago
- ☆10Aug 28, 2025Updated last year
- Subclassification of disease states based on the intersection of literature and expression☆13Jan 15, 2019Updated 7 years ago
- the Metagenomic test for Presence Or Absence of Pathways☆13Mar 4, 2019Updated 7 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- MiGA: Microbial Genomes Atlas☆33Aug 7, 2026Updated last month
- Bluetooth Internet Adapter is an idea for a solution allowing Personal Computers to access Internet content via Bluetooth connection to a…☆15Apr 12, 2010Updated 16 years ago
- A list of weak Bacterial assemblies in GenBank☆18Aug 3, 2017Updated 9 years ago
- ASMNGS18 - 2018 Conference Details☆12Oct 3, 2018Updated 7 years ago
- IRIDA Next☆15Updated this week
- Efficient and comprehensive metadata acquisition from the NCBI databases (includes SRA).☆56May 25, 2022Updated 4 years ago
- Design and implementation of FAIR Data Cube☆12Jun 2, 2025Updated last year
- WG3 Metadata Specification☆28Nov 5, 2018Updated 7 years ago
- R shiny app for interactive microbiome analysis☆55Updated this week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Bar chart library based on d3.js☆14Oct 31, 2016Updated 9 years ago
- Visualising / Exploring Linked Data (SPARQL Construct queries) in Virtual Reality.☆16Jun 18, 2024Updated 2 years ago
- Northern Arizona SNP Pipeline☆20Oct 29, 2024Updated last year
- HMM-guided metagenomic gene-targeted assembler using iterative de Bruijn graphs☆18Oct 3, 2016Updated 9 years ago
- HiView: the universal viewer for hierarchical data☆16Mar 23, 2023Updated 3 years ago
- Bioinformatics curated workflows that use Biocontainers tools☆19Jun 11, 2019Updated 7 years ago
- SKESA assembler☆127Oct 11, 2024Updated last year
- UniqTag: Content-derived unique and stable identifiers for gene annotation☆10May 4, 2015Updated 11 years ago
- Scripts to analyze gene content and make a concatenated alignment of core genes from bacterial genomes.☆19Jul 20, 2018Updated 8 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Functional annotation pipeline for proteins from non-model organisms implemented in Nextflow☆20Feb 28, 2022Updated 4 years ago
- Code examples for working with web based bioinformatics APIs☆10Feb 17, 2017Updated 9 years ago
- dbVar☆41Jul 22, 2026Updated 2 months ago
- Metagenomic species profiling with enhanced coverage of the human gut microbiome☆26May 18, 2024Updated 2 years ago
- NLM Medical Text Indexer (MTI)☆10May 18, 2022Updated 4 years ago
- Bacterial Genomics workflow for short(Illumina) and long-read (Oxford Nanopore) sequencing data☆12Feb 20, 2026Updated 7 months ago
- Service discovery for Finagle cluster with Consul.☆10Sep 27, 2018Updated 7 years ago
- JHU EN.600.649: Computational Genomics: Applied Comparative Genomics☆59Mar 8, 2018Updated 8 years ago
- SPARQList: Repository server for working SPARQL snippets☆15Jun 16, 2026Updated 3 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A resistome profiler for Graphing Resistance Out Of meTagenomes☆65Sep 15, 2026Updated last week
- Influenza genome analysis Nextflow workflow☆28Jun 3, 2026Updated 3 months ago
- List of computational resources for analyzing microbial sequencing data.☆67Nov 18, 2025Updated 10 months ago
- A Jupyter Notebook extension for Docker☆15Sep 2, 2019Updated 7 years ago
- Antibiotic resistance predictions in minutes on a laptop☆50Mar 7, 2019Updated 7 years ago
- A python tool to do comparative analysis of mulitple single cell datasets.☆21Oct 25, 2019Updated 6 years ago
- Contains the code and workflow for the bacterial strain definition paper with Kostas Kostantinidis☆14Dec 4, 2023Updated 2 years ago