metashot / prok-qualityLinks
Assessing the quality of prokaryotic genomes, filtering and dereplication
☆11Updated 3 years ago
Alternatives and similar repositories for prok-quality
Users that are interested in prok-quality are comparing it to the libraries listed below
Sorting:
- Improvement of metagenome-assembled genomes☆54Updated 5 years ago
- MAG Circularization Method☆32Updated 2 months ago
- CroCoDeEL is a tool that detects cross-sample contamination in shotgun metagenomic data☆24Updated 5 months ago
- A random forest classifier to identify contigs of plasmid origin in contig and scaffold genomes☆19Updated 2 years ago
- Automatic eukaryotic taxonomic classification☆29Updated 8 months ago
- Snakemake pipeline for downstream analysis of metagenome-assembled genomes (MAGs) (pronounced mag-pie)☆61Updated 2 years ago
- An R package identifying horizontal gene co-transfer between bacteria using association analysis and whole-genome sequences☆27Updated 3 years ago
- A pipeline for bioinformatics analysis of bacterial genomes☆32Updated this week
- GTDB => NCBI☆15Updated last year
- Bacterial GWAS analysis☆46Updated 2 months ago
- Ley Lab MetaGenome Profiler DataBase generator☆49Updated 3 years ago
- BEAV: Bacterial Element Annotation reVamped☆73Updated 4 months ago
- Calculate assocations between genes and traits☆29Updated 10 months ago
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome☆50Updated 3 years ago
- High-resolution strain-level microbiome composition analysis tool based on reference genomes and k-mers☆43Updated last year
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆71Updated last week
- Discover and annotate the virome☆58Updated 2 months ago
- Predict plasmids from uncorrected long read data☆41Updated 2 months ago
- ☆33Updated 2 years ago
- Extract metadata from biosamples in NCBI☆17Updated 4 years ago
- AMR++ is a bioinformatic pipeline meant to aid in the analysis of raw sequencing reads to characterize the profile of antimicrobial resis…☆46Updated 3 weeks ago
- Remove contaminated contigs from genomes using k-mers and taxonomies.☆59Updated 2 years ago
- Downstream processing of VAMB binning for Viral Elucidation☆53Updated last year
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆35Updated 2 years ago
- Strain Resolution ON Graphs☆50Updated 2 years ago
- MDMcleaner the assessment, classification and refinement tool for microbial dark matter SAGs and MAGs☆23Updated 2 years ago
- TAXnomic Profile Aggregation and STAndardisation☆41Updated last month
- More scalable dereplication for metagenome assembled genomes☆75Updated 3 weeks ago
- ☆20Updated last year
- Bacterial genomes finishing tool for structural insights on draft genomes☆23Updated 2 years ago