metashot / prok-qualityLinks
Assessing the quality of prokaryotic genomes, filtering and dereplication
☆11Updated 2 years ago
Alternatives and similar repositories for prok-quality
Users that are interested in prok-quality are comparing it to the libraries listed below
Sorting:
- Improvement of metagenome-assembled genomes☆52Updated 5 years ago
- MDMcleaner the assessment, classification and refinement tool for microbial dark matter SAGs and MAGs☆24Updated 2 years ago
- MAG Circularization Method☆33Updated 3 years ago
- A random forest classifier to identify contigs of plasmid origin in contig and scaffold genomes☆19Updated 2 years ago
- ☆20Updated 9 months ago
- CroCoDeEL is a tool that detects cross-sample contamination in shotgun metagenomic data☆24Updated 2 weeks ago
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆27Updated 7 months ago
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome☆49Updated 2 years ago
- Extract metadata from biosamples in NCBI☆14Updated 4 years ago
- An R package identifying horizontal gene co-transfer between bacteria using association analysis and whole-genome sequences☆25Updated 2 years ago
- Small utility script to submit genomes to PHASTER for phage detection☆24Updated 3 years ago
- Automatic eukaryotic taxonomic classification☆28Updated 3 weeks ago
- MAGScoT - a MAG scoring and refinement tool☆35Updated 7 months ago
- Calculate assocations between genes and traits☆23Updated 2 months ago
- ☆25Updated last year
- Gene Absence Presence Identification tool.☆26Updated 2 months ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆30Updated 2 years ago
- ☆28Updated last year
- This program is designed for annotation of antimicrobal resistance(AMR), transposon(Tn) and integron(In) in bacteria.☆21Updated 2 years ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆28Updated last year
- RCandy: an R package for visualising homologous recombination events in bacterial genomes☆22Updated 2 years ago
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆29Updated 4 months ago
- ☆16Updated 4 years ago
- ☆45Updated last year
- Downstream processing of VAMB binning for Viral Elucidation☆50Updated 11 months ago
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆35Updated 4 years ago
- Snakemake workflow to map and quantify microbial genomes in metagenomic reads☆12Updated last year
- Structural and functional annotation of eukaryotic metagenome-assembled genomes☆22Updated 2 years ago
- Detect contigs of complete circular genomes☆23Updated 6 years ago
- Identify and remove contaminants from metagenome-assembled genomes☆18Updated last year