AMR++ is a bioinformatic pipeline meant to aid in the analysis of raw sequencing reads to characterize the profile of antimicrobial resistance genes, or resistome.
☆47Feb 16, 2026Updated last month
Alternatives and similar repositories for AMRplusplus
Users that are interested in AMRplusplus are comparing it to the libraries listed below
Sorting:
- MEGARes and AmrPlusPlus - A comprehensive database of antimicrobial resistance genes and user-friendly pipeline for analysis of high-thro…☆26Nov 14, 2022Updated 3 years ago
- AMRFinderPlus - Identify AMR genes and point mutations, and virulence and stress resistance genes in assembled bacterial nucleotide and p…☆355Mar 4, 2026Updated 2 weeks ago
- MetaCompare☆19Mar 3, 2024Updated 2 years ago
- ARGs-OAP: Online Analysis Pipeline for Antibiotic Resistance Genes Detection from Metagenomic Data Using an Integrated Structured ARG Dat…☆72Mar 16, 2025Updated last year
- code repo for mobileOG-db☆46Nov 6, 2025Updated 4 months ago
- Predicting Absolute and Relative Abundance by Modeling Efficiency to Derive Intervals and Concentrations☆14Nov 24, 2025Updated 3 months ago
- Professional Comprehensive Omics Data Analysis☆29Feb 10, 2026Updated last month
- Antibiotic resistance genes (ARGs) have accelerated microbial threats to human health during the last decade. Here we determined the risk…☆19Apr 8, 2022Updated 3 years ago
- ☆24Apr 20, 2023Updated 2 years ago
- Metagenomic Analysis in Real Time☆29Feb 25, 2026Updated 3 weeks ago
- Bioinformatics tool to find integrons in bacterial genomes☆86May 7, 2025Updated 10 months ago
- R package for microbiome data visualization and statistics. Uses phyloseq, vegan and the tidyverse. Docker image available.☆123Feb 27, 2026Updated 3 weeks ago
- Processing support for Greengenes2☆14Jul 31, 2023Updated 2 years ago
- A tool for identifying phages and plasmids from metagenomic fragments using deep learning☆44Apr 13, 2021Updated 4 years ago
- Official place for proposals and details around monkeypox virus lineage designations☆23Dec 9, 2025Updated 3 months ago
- lsaBGC - suite for pan-BGC-omics analysis☆23Nov 21, 2025Updated 3 months ago
- Contains a fasta format database of a large variety of mobile genetic elements and an annotation file☆52Aug 16, 2021Updated 4 years ago
- Ley Lab MetaGenome Profiler DataBase generator☆49Nov 9, 2022Updated 3 years ago
- Count and compare 16S rRNA genes within a genus☆16Aug 1, 2024Updated last year
- Parse multiple Antimicrobial Resistance Analysis Reports into a common data structure☆175Feb 26, 2026Updated 3 weeks ago
- R shiny app for interactive microbiome analysis☆56Jun 5, 2025Updated 9 months ago
- The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or t…☆73Sep 1, 2022Updated 3 years ago
- MaAsLin3: Microbiome Multivariate Association with Linear Models☆71Mar 7, 2026Updated 2 weeks ago
- Classify metagenomic contigs as eukaryotic or prokaryotic☆43Feb 17, 2023Updated 3 years ago
- A tool easily taken advantage of for in silico serogrouping of Pseudomonas aeruginosa isolates☆14Aug 26, 2024Updated last year
- Count Regression for Correlated Observations with the Beta-binomial☆107Nov 13, 2025Updated 4 months ago
- Assessing the quality of metagenome-derived genome bins using machine learning☆252Mar 20, 2025Updated last year
- This is a comprehensive database for fast and accurately analyzing the phosphorus cycling genes.☆34Jul 12, 2022Updated 3 years ago
- scripts for estimating bacteria replication rates based on population genome copy number variation☆74Dec 28, 2019Updated 6 years ago
- Trans-Kingdom Marker Gene Pipeline for Taxonomic Profiling of Human Metagenomes☆23Nov 24, 2025Updated 3 months ago
- A pipeline for for large-scale analysis of antimicrobial resistance genes and their flanking regions in metagenomic datasets☆31Nov 9, 2025Updated 4 months ago
- An accurate and sensitive bacterial plasmid identification tool based on deep machine-learning of shared k-mers and genomic features.☆49Apr 20, 2023Updated 2 years ago
- MaAsLin2: Microbiome Multivariate Association with Linear Models☆152Feb 5, 2026Updated last month
- A flexible pipeline for complete analysis of bacterial genomes☆501Mar 14, 2026Updated last week
- A hybrid assembly and MAG recovery pipeline (and more!)☆104Jan 27, 2026Updated last month
- Semi-parametric Rank-Based Correlation and Partial Correlation Estimation for Quantitative Microbiome Data☆23Jun 27, 2022Updated 3 years ago
- Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data☆183Updated this week
- Factorize metagenotypes to infer strains and their abundances☆12Sep 29, 2024Updated last year
- R package for computing alpha and beta contributional diversity metrics☆11May 5, 2023Updated 2 years ago