AMR++ is a bioinformatic pipeline meant to aid in the analysis of raw sequencing reads to characterize the profile of antimicrobial resistance genes, or resistome.
☆53Jun 27, 2026Updated this week
Alternatives and similar repositories for AMRplusplus
Users that are interested in AMRplusplus are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- MEGARes and AmrPlusPlus - A comprehensive database of antimicrobial resistance genes and user-friendly pipeline for analysis of high-thro…☆26Nov 14, 2022Updated 3 years ago
- AMRFinderPlus - Identify AMR genes and point mutations, and virulence and stress resistance genes in assembled bacterial nucleotide and p…☆370May 22, 2026Updated last month
- MetaCompare☆20Mar 3, 2024Updated 2 years ago
- ARGs-OAP: Online Analysis Pipeline for Antibiotic Resistance Genes Detection from Metagenomic Data Using an Integrated Structured ARG Dat…☆72Mar 16, 2025Updated last year
- code repo for mobileOG-db☆49Nov 6, 2025Updated 7 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Predicting Absolute and Relative Abundance by Modeling Efficiency to Derive Intervals and Concentrations☆15Nov 24, 2025Updated 7 months ago
- Professional Comprehensive Omics Data Analysis☆32Apr 3, 2026Updated 2 months ago
- Antibiotic resistance genes (ARGs) have accelerated microbial threats to human health during the last decade. Here we determined the risk…☆19Apr 8, 2022Updated 4 years ago
- ☆26Apr 20, 2023Updated 3 years ago
- Metagenomic Analysis in Real Time☆30Jun 23, 2026Updated last week
- Bioinformatics tool to find integrons in bacterial genomes☆88May 7, 2025Updated last year
- R package for microbiome data visualization and statistics. Uses phyloseq, vegan and the tidyverse. Docker image available.☆129Jun 1, 2026Updated 3 weeks ago
- A tool for identifying phages and plasmids from metagenomic fragments using deep learning☆44Apr 13, 2021Updated 5 years ago
- Official place for proposals and details around monkeypox virus lineage designations☆23Jun 12, 2026Updated 2 weeks ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- lsaBGC - suite for pan-BGC-omics analysis☆23Nov 21, 2025Updated 7 months ago
- Contains a fasta format database of a large variety of mobile genetic elements and an annotation file☆53Aug 16, 2021Updated 4 years ago
- Ley Lab MetaGenome Profiler DataBase generator☆48Nov 9, 2022Updated 3 years ago
- Processing support for Greengenes2☆15Jul 31, 2023Updated 2 years ago
- Count and compare 16S rRNA genes within a genus☆16Aug 1, 2024Updated last year
- Parse multiple Antimicrobial Resistance Analysis Reports into a common data structure☆179Apr 22, 2026Updated 2 months ago
- R shiny app for interactive microbiome analysis☆56Jun 5, 2025Updated last year
- The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or t…☆74Sep 1, 2022Updated 3 years ago
- MaAsLin3: Microbiome Multivariate Association with Linear Models☆84Updated this week
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Classify metagenomic contigs as eukaryotic or prokaryotic☆46Feb 17, 2023Updated 3 years ago
- A tool easily taken advantage of for in silico serogrouping of Pseudomonas aeruginosa isolates☆14Aug 26, 2024Updated last year
- Assessing the quality of metagenome-derived genome bins using machine learning☆268Mar 20, 2025Updated last year
- Count Regression for Correlated Observations with the Beta-binomial☆108Nov 13, 2025Updated 7 months ago
- This is a comprehensive database for fast and accurately analyzing the phosphorus cycling genes.☆37Jul 12, 2022Updated 3 years ago
- scripts for estimating bacteria replication rates based on population genome copy number variation☆75Dec 28, 2019Updated 6 years ago
- Trans-Kingdom Marker Gene Pipeline for Taxonomic Profiling of Human Metagenomes☆23Nov 24, 2025Updated 7 months ago
- A pipeline for for large-scale analysis of antimicrobial resistance genes and their flanking regions in metagenomic datasets☆31Nov 9, 2025Updated 7 months ago
- An accurate and sensitive bacterial plasmid identification tool based on deep machine-learning of shared k-mers and genomic features.☆50Apr 20, 2023Updated 3 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- A flexible pipeline for complete analysis of bacterial genomes☆518May 21, 2026Updated last month
- A hybrid assembly and MAG recovery pipeline (and more!)☆108Jun 12, 2026Updated 2 weeks ago
- Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data☆188Jun 16, 2026Updated 2 weeks ago
- Semi-parametric Rank-Based Correlation and Partial Correlation Estimation for Quantitative Microbiome Data☆23May 16, 2026Updated last month
- MaAsLin2: Microbiome Multivariate Association with Linear Models☆155Feb 5, 2026Updated 4 months ago
- Factorize metagenotypes to infer strains and their abundances☆12Sep 29, 2024Updated last year
- MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies☆175Apr 16, 2025Updated last year