AMR++ is a bioinformatic pipeline meant to aid in the analysis of raw sequencing reads to characterize the profile of antimicrobial resistance genes, or resistome.
☆55Jul 16, 2026Updated this week
Alternatives and similar repositories for AMRplusplus
Users that are interested in AMRplusplus are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- AMRFinderPlus - Identify AMR genes and point mutations, and virulence and stress resistance genes in assembled bacterial nucleotide and p…☆378Jul 12, 2026Updated last week
- ☆26Apr 20, 2023Updated 3 years ago
- MEGARes and AmrPlusPlus - A comprehensive database of antimicrobial resistance genes and user-friendly pipeline for analysis of high-thro…☆26Nov 14, 2022Updated 3 years ago
- ARGs-OAP: Online Analysis Pipeline for Antibiotic Resistance Genes Detection from Metagenomic Data Using an Integrated Structured ARG Dat…☆74Mar 16, 2025Updated last year
- MetaCompare☆20Mar 3, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies☆179Apr 16, 2025Updated last year
- Bioinformatics tool to find integrons in bacterial genomes☆92May 7, 2025Updated last year
- A tool for identifying phages and plasmids from metagenomic fragments using deep learning☆44Apr 13, 2021Updated 5 years ago
- Professional Comprehensive Omics Data Analysis☆32Apr 3, 2026Updated 3 months ago
- Contains a fasta format database of a large variety of mobile genetic elements and an annotation file☆53Aug 16, 2021Updated 4 years ago
- A hybrid assembly and MAG recovery pipeline (and more!)☆109Jul 10, 2026Updated last week
- ShortBRED is a pipeline to take a set of protein sequences, reduce them to a set of unique identifying strings ("markers"), and then sear…☆31Jan 24, 2025Updated last year
- code repo for mobileOG-db☆49Nov 6, 2025Updated 8 months ago
- Assessing the quality of metagenome-derived genome bins using machine learning☆271Mar 20, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- R package for microbiome data visualization and statistics. Uses phyloseq, vegan and the tidyverse. Docker image available.☆129Jun 1, 2026Updated last month
- Antibiotic resistance genes (ARGs) have accelerated microbial threats to human health during the last decade. Here we determined the risk…☆19Apr 8, 2022Updated 4 years ago
- Resistance Gene Identifier (RGI). Software to predict resistomes from protein or nucleotide data, including metagenomics data, based on h…☆425May 20, 2026Updated 2 months ago
- A tool easily taken advantage of for in silico serogrouping of Pseudomonas aeruginosa isolates☆15Aug 26, 2024Updated last year
- Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data☆188Jul 9, 2026Updated last week
- R shiny app for interactive microbiome analysis☆56Jun 5, 2025Updated last year
- Parse multiple Antimicrobial Resistance Analysis Reports into a common data structure☆180Apr 22, 2026Updated 2 months ago
- geNomad: Identification of mobile genetic elements☆323Mar 29, 2026Updated 3 months ago
- Trans-Kingdom Marker Gene Pipeline for Taxonomic Profiling of Human Metagenomes☆23Nov 24, 2025Updated 7 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- An accurate and sensitive bacterial plasmid identification tool based on deep machine-learning of shared k-mers and genomic features.☆50Apr 20, 2023Updated 3 years ago
- Metagenomic Analysis in Real Time☆31Jul 7, 2026Updated 2 weeks ago
- GTDB => NCBI☆15Nov 14, 2024Updated last year
- Mass screening of contigs for antimicrobial and virulence genes☆501Updated this week
- A pipeline for for large-scale analysis of antimicrobial resistance genes and their flanking regions in metagenomic datasets☆31Nov 9, 2025Updated 8 months ago
- KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files☆380Aug 1, 2025Updated 11 months ago
- A flexible pipeline for complete analysis of bacterial genomes☆518May 21, 2026Updated 2 months ago
- BSR-Based Allele Calling Algorithm☆149Jul 8, 2026Updated last week
- A pipeline for running AMRfinderPlus and collating results into functional classes☆100Jun 8, 2026Updated last month
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A method for reconstruction of subspecies composition and functional profiles from metagenomic data☆13May 27, 2024Updated 2 years ago
- Predicting Absolute and Relative Abundance by Modeling Efficiency to Derive Intervals and Concentrations☆15Nov 24, 2025Updated 7 months ago
- Official place for proposals and details around monkeypox virus lineage designations☆23Jul 7, 2026Updated 2 weeks ago
- ☆13Sep 4, 2017Updated 8 years ago
- ☆22Jan 14, 2024Updated 2 years ago
- The construction of reference gene catalog and metagenome-assembled genomes of pig gut microbiome.☆30Jul 21, 2022Updated 4 years ago
- SourceTracker2☆92Jul 10, 2024Updated 2 years ago