benjjneb / LRASManuscriptLinks
Reproducible Analyses accompanying DADA2 + PacBio Manuscript
☆32Updated 4 years ago
Alternatives and similar repositories for LRASManuscript
Users that are interested in LRASManuscript are comparing it to the libraries listed below
Sorting:
- The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or t…☆72Updated 2 years ago
- MicrobeCensus estimates the average genome size of microbial communities from metagenomic data☆46Updated 5 years ago
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆54Updated last month
- Statistical analysis for sparse high-throughput sequencing☆69Updated 7 months ago
- r package for post-clustering curation of amplicon next generation sequencing data (metabarcoding)☆67Updated last year
- General procedure for making QIIME 2 compatible SILVA reference files☆20Updated 10 months ago
- ☆41Updated 7 years ago
- Visualize microbiome data with black magic ggtree☆68Updated 4 years ago
- Create BIOM-format tables (http://biom-format.org) from Kraken output (http://ccb.jhu.edu/software/kraken/, https://github.com/DerrickWoo…☆56Updated 3 years ago
- SAMSA pipeline, version 2.0. An open-source metatranscriptomics pipeline for analyzing microbiome data, built around DIAMOND and customi…☆55Updated last year
- Compare different differential abundance and expression methods☆51Updated 3 years ago
- SHallow shOtGUN profiler☆54Updated 3 years ago
- ☆76Updated last year
- A set of R scripts for the analysis of microbial profiles☆41Updated last year
- Bash pipeline for analysis of ONT full-length 16S sequences in QIIME2☆30Updated 5 years ago
- R implementation of the LEfSe method☆59Updated 3 months ago
- Track, Analyze, Visualize: Unravel Your Microbiome's Temporal Pattern with MicrobiomeStat☆43Updated last week
- Analysing Metagenomic Species (MGS)☆41Updated 4 years ago
- Course materials for the Genomics Aotearoa Metagenomics Summer School, to be hosted at the University of Auckland in Septermber☆62Updated 11 months ago
- Scripts and resources for analyzing sequence data for select eco-functional genes☆20Updated 8 years ago
- MaAsLin3: Microbiome Multivariate Association with Linear Models☆41Updated last month
- Automated pipeline for analyses of fungal ITS from the Illumina☆31Updated 3 months ago
- Course material for the metagenomics course☆44Updated 3 years ago
- Micro 612 genomics workshop☆37Updated 4 years ago
- Metagenomics Workshop☆28Updated 8 years ago
- A microbiome analysis toolkit for R☆24Updated last year
- Rapid and scalable correlation estimation for compositional data☆92Updated last year
- Transform files to the microtable object with microeco package☆27Updated 4 months ago
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆45Updated last year
- Amplicon sequence processing workflow using QIIME 2 and Snakemake☆47Updated this week