benjjneb / LRASManuscript
Reproducible Analyses accompanying DADA2 + PacBio Manuscript
☆30Updated 4 years ago
Related projects ⓘ
Alternatives and complementary repositories for LRASManuscript
- Create BIOM-format tables (http://biom-format.org) from Kraken output (http://ccb.jhu.edu/software/kraken/, https://github.com/DerrickWoo…☆47Updated 2 years ago
- Statistical analysis for sparse high-throughput sequencing☆67Updated 7 months ago
- ☆37Updated 6 years ago
- MicrobeCensus estimates the average genome size of microbial communities from metagenomic data☆43Updated 4 years ago
- ☆23Updated 6 years ago
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆53Updated 2 months ago
- Collection of notebooks describing the basic analysis workflow for a 16S rRNA gene amplicon sequencing project☆11Updated 2 years ago
- A set of R scripts for the analysis of microbial profiles☆40Updated 5 months ago
- Tranform files to the microtable object in microeco package☆22Updated last week
- Compare different differential abundance and expression methods☆50Updated 2 years ago
- Automated pipeline for analyses of fungal ITS from the Illumina☆30Updated 2 months ago
- Bash pipeline for analysis of ONT full-length 16S sequences in QIIME2☆27Updated 4 years ago
- The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or t…☆69Updated 2 years ago
- Analysis of metagenomic shotgun sequences including assembly, speciation, ARG discovery and more☆26Updated last year
- SHallow shOtGUN profiler☆54Updated 2 years ago
- The is mostly a wrapper tool using phyloseq and microbiome R packages.☆33Updated last year
- Microbiome Analysis Using R Workshop originally organized for the 2018 ASM General Meeting in Atlanta, GA, but regularly updated since.☆27Updated 2 years ago
- Metagenomics Workshop☆28Updated 7 years ago
- General procedure for making QIIME 2 compatible SILVA reference files☆20Updated last month
- Track, Analyze, Visualize: Unravel Your Microbiome's Temporal Pattern with MicrobiomeStat☆31Updated this week
- Workshop materials for the Second Benthic Invertebrates, Metagenomics, and Bioinformatics Workshop at the TAMUCC Harte Institute in Corpu…☆21Updated 6 years ago
- Fantaxtic - Nested Bar Plots for Phyloseq Data☆26Updated 3 months ago
- ☆12Updated 3 years ago
- ☆30Updated last year
- Scripts and resources for analyzing sequence data for select eco-functional genes☆19Updated 7 years ago
- Pipeline for Reproducible and Scalable Integration of Metagenomic and Metatranscriptomic Data☆14Updated this week
- Computational workflows for metagenomics tasks, by the Bhatt lab☆46Updated last year
- Please use mmgenome2 instead. Tools for extracting individual genomes from metagenomes☆27Updated 7 years ago
- Batch effects removal for microbiome data via conditional quantile regression☆26Updated 2 years ago