benjjneb / LRASManuscript
Reproducible Analyses accompanying DADA2 + PacBio Manuscript
☆32Updated 4 years ago
Alternatives and similar repositories for LRASManuscript:
Users that are interested in LRASManuscript are comparing it to the libraries listed below
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆54Updated last month
- Statistical analysis for sparse high-throughput sequencing☆69Updated 2 months ago
- ☆23Updated 6 years ago
- A set of R scripts for the analysis of microbial profiles☆42Updated 9 months ago
- MicrobeCensus estimates the average genome size of microbial communities from metagenomic data☆43Updated 4 years ago
- Analysing Metagenomic Species (MGS)☆41Updated 4 years ago
- The is mostly a wrapper tool using phyloseq and microbiome R packages.☆34Updated 2 years ago
- Compare different differential abundance and expression methods☆51Updated 2 years ago
- Collection of notebooks describing the basic analysis workflow for a 16S rRNA gene amplicon sequencing project☆11Updated 2 years ago
- Metagenomics Workshop☆28Updated 8 years ago
- MaAsLin3: Microbiome Multivariate Association with Linear Models☆29Updated this week
- A microbiome analysis toolkit for R☆22Updated last year
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆45Updated last year
- Transform files to the microtable object with microeco package☆25Updated 2 months ago
- Metagenomics-related extended functionalities to samtools☆20Updated last year
- Track, Analyze, Visualize: Unravel Your Microbiome's Temporal Pattern with MicrobiomeStat☆37Updated 2 weeks ago
- SHallow shOtGUN profiler☆53Updated 2 years ago
- Create BIOM-format tables (http://biom-format.org) from Kraken output (http://ccb.jhu.edu/software/kraken/, https://github.com/DerrickWoo…☆52Updated 2 years ago
- The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or t…☆70Updated 2 years ago
- functions for analyzing phyloseq data☆26Updated 3 weeks ago
- Bash pipeline for analysis of ONT full-length 16S sequences in QIIME2☆29Updated 5 years ago
- ☆49Updated 10 months ago
- Snakemake pipeline for downstream analysis of metagenome-assembled genomes (MAGs) (pronounced mag-pie)☆62Updated last year
- Microbiome Analysis Using R Workshop originally organized for the 2018 ASM General Meeting in Atlanta, GA, but regularly updated since.☆27Updated 2 years ago
- General procedure for making QIIME 2 compatible SILVA reference files☆20Updated 4 months ago
- HoCoRT - Remove specific organisms from sequencing reads☆17Updated last month
- ☆32Updated last year
- Sparse Cooccurence Network Investigation for Compositional data☆24Updated 4 months ago
- Automated pipeline for analyses of fungal ITS from the Illumina☆31Updated 6 months ago
- Please use mmgenome2 instead. Tools for extracting individual genomes from metagenomes☆27Updated 7 years ago