hcdenbakker / GTDB_Kraken
Kraken(2) database based on the GTDB project
β27Updated 6 years ago
Alternatives and similar repositories for GTDB_Kraken:
Users that are interested in GTDB_Kraken are comparing it to the libraries listed below
- TAXnomic Profile Aggregation and STAndardisationβ34Updated 3 months ago
- π π« Trim, circularise and orient long read bacterial genome assembliesβ26Updated 5 years ago
- Strain-level abundances estimation in metagenomic samples using variation graphsβ25Updated 2 years ago
- Assembly based core genome SNP alignments for bacteriaβ25Updated 5 years ago
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes databaseβ40Updated 4 years ago
- Detect contigs of complete circular genomesβ22Updated 5 years ago
- Get microbial sequence data easier and fasterβ28Updated 5 years ago
- Fast and space-efficient taxonomic classification of long readsβ43Updated 3 months ago
- MAGScoT - a MAG scoring and refinement toolβ31Updated 3 months ago
- Output FASTQ summary statistics in JSON formatβ29Updated 2 years ago
- Interactive, web tool for exploring pan-genome of bacterial strainsβ45Updated 2 years ago
- Snakemake pipeline calculating KEGG orthologue abundance in metagenomic sequence data.β24Updated 3 months ago
- Ley Lab MetaGenome Profiler DataBase generatorβ48Updated 2 years ago
- Intra-species bacterial contamination detectionβ24Updated 2 months ago
- Predict plasmids from uncorrected long read dataβ39Updated 5 years ago
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenomeβ48Updated 2 years ago
- Strain Resolution ON Graphsβ47Updated last year
- Snakemake workflow for scoring and comparing multiple bacterial genome assemblies (Illumina, Nanopore) to reference genome(s).β24Updated 9 months ago
- MetaSNV, a metagenomic SNV calling pipeline.β20Updated 2 years ago
- strain-level analysis toolsβ34Updated 3 months ago
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPsβ25Updated 3 months ago
- GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and meβ¦β22Updated last year
- β‘οΈπ§¬ FastMLST: A multi-core tool for multilocus sequence typing of draft genome assembliesβ23Updated last year
- π¬π Rapid 16s rRNA identification from isolate FASTQ filesβ23Updated 6 years ago
- Please use mmgenome2 instead. Tools for extracting individual genomes from metagenomesβ27Updated 7 years ago
- Strain Prediction and Analysis with Representative SEquenceβ18Updated last month
- Improvement of metagenome-assembled genomesβ51Updated 4 years ago
- Strain-level haplotyping for metagenomes with short or long-reads.β49Updated 6 months ago
- Bacterial taxonomy construction and evaluation in Rβ13Updated last year
- β16Updated 4 years ago