hcdenbakker / GTDB_KrakenLinks
Kraken(2) database based on the GTDB project
☆27Updated 6 years ago
Alternatives and similar repositories for GTDB_Kraken
Users that are interested in GTDB_Kraken are comparing it to the libraries listed below
Sorting:
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome☆49Updated 2 years ago
- Discover and annotate the virome☆45Updated 3 weeks ago
- Interactive, web tool for exploring pan-genome of bacterial strains☆46Updated 2 years ago
- PLSDB pipeline to collect bacterial plasmids from NCBI☆38Updated 9 months ago
- Ley Lab MetaGenome Profiler DataBase generator☆50Updated 2 years ago
- Get microbial sequence data easier and faster☆28Updated 5 years ago
- Predict plasmids from uncorrected long read data☆40Updated 5 years ago
- 🔬🐛 Rapid 16s rRNA identification from isolate FASTQ files☆24Updated 7 years ago
- Calculate assocations between genes and traits☆25Updated 5 months ago
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆42Updated 4 years ago
- Bacterial GWAS analysis☆43Updated 2 weeks ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆28Updated 2 years ago
- Mandrake 🌿/👨🔬🦆 – Fast visualisation of the population structure of pathogens using Stochastic Cluster Embedding☆38Updated 5 months ago
- Strain Resolution ON Graphs☆48Updated 2 years ago
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆24Updated last year
- Automated strain separation of low-complexity metagenomes☆51Updated 3 years ago
- MAG Circularization Method☆33Updated 3 years ago
- Gene-flank analysis tool☆28Updated 7 months ago
- Intra-species bacterial contamination detection☆25Updated 5 months ago
- 🍊 💫 Trim, circularise and orient long read bacterial genome assemblies☆26Updated 5 years ago
- 🐻⇔🐨 Calculate distance matrix from ChewBBACA cgMLST allele call tables☆28Updated last year
- Read mapping pipeline for detection and measurement of virus pathogens from metagenomic or clinical data☆32Updated last week
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆32Updated 2 weeks ago
- Phylogeny Enhanded Prediction of PAN-genome☆41Updated 5 years ago
- Remove contaminated contigs from genomes using k-mers and taxonomies.☆59Updated last year
- A tool for removing redundant genomes from a set of assemblies☆73Updated last year
- Recombination-free trees☆59Updated 4 months ago
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆35Updated 4 years ago
- reference-based long read assemblies of bacterial genomes☆50Updated 4 years ago
- k-mer based Pipeline to identify the Serotype from Illumina NGS reads☆24Updated 2 years ago