edgraham / GhostKoalaParser
Parser for Ghost Koala
☆9Updated 6 years ago
Alternatives and similar repositories for GhostKoalaParser:
Users that are interested in GhostKoalaParser are comparing it to the libraries listed below
- This is a comprehensive database for fast and accurately analyzing the phosphorus cycling genes.☆31Updated 2 years ago
- A random forest classifier to identify contigs of plasmid origin in contig and scaffold genomes☆17Updated last year
- MAG Circularization Method☆33Updated 2 years ago
- ☆18Updated 4 months ago
- A quick workflow to get researchers started with the bioinformatic pipeline used in the Environmental Metagenomics program.☆10Updated 8 months ago
- CroCoDeEL is a tool that detects cross-sample contamination in shotgun metagenomic data☆19Updated this week
- BinaRena: Interactive Visualization and Binning of Metagenomic Contigs☆30Updated 5 months ago
- Resolving Species Level Classification Using Emu☆12Updated 7 months ago
- Improvement of metagenome-assembled genomes☆51Updated 4 years ago
- ☆25Updated last year
- An R package identifying horizontal gene co-transfer between bacteria using association analysis and whole-genome sequences☆25Updated 2 years ago
- Calculate assocations between genes and traits☆20Updated 3 months ago
- Working with the outputs of sourmash in R☆26Updated last year
- Extract metadata from biosamples in NCBI☆11Updated 3 years ago
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes to select representatives for comparative genomics and met…☆41Updated last month
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆26Updated 2 months ago
- MDMcleaner the assessment, classification and refinement tool for microbial dark matter SAGs and MAGs☆22Updated last year
- Tool for constructing phylogenies and summarizing metabolic characteristics based on curated and custom profile HMMs☆18Updated 2 years ago
- Please use mmgenome2 instead. Tools for extracting individual genomes from metagenomes☆27Updated 7 years ago
- Fast and accurate Average Genome Size and 16S rRNA gene Average Copy Number computation in metagenomic data☆14Updated last month
- ☆15Updated 3 years ago
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆25Updated 3 months ago
- ☆13Updated 7 years ago
- R markdown documents copied from other folders on Dec 15th 2021☆14Updated last year
- Structural and functional annotation of eukaryotic metagenome-assembled genomes☆21Updated last year
- Small utility script to submit genomes to PHASTER for phage detection☆23Updated 3 years ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆31Updated last year
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆22Updated 6 months ago
- Classify metagenomic contigs as eukaryotic or prokaryotic☆32Updated last year
- Metagenomic Estimation of Dietary Intake and Content.☆15Updated this week