Alternatives and similar repositories for STARmap

Users that are interested in STARmap are comparing it to the libraries listed below

• CaiGroup / seqFISH-PLUS
  ☆52Updated 4 years ago
• camlab-bioml / astir
  astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨
  ☆53Updated last year
• willtownes / nsf-paper
  Nonnegative spatial factorization for multivariate count data
  ☆58Updated last year
• spacetx-spacejam / data
  data for spacejam2
  ☆17Updated 2 years ago
• Vizgen / vizgen-postprocessing
  The Vizgen Post-processing Tool (VPT) enables users to reprocess and refine the single-cell results of MERSCOPE experiments.
  ☆27Updated 9 months ago
• shuxiaoc / mario-py
  MARIO: single-cell proteomic data matching and integration using both shared and distinct features
  ☆22Updated last year
• HiDiHlabs / ssam
  ☆27Updated 8 months ago
• mbernste / SpatialCorr
  SpatialCorr: Identify gene sets with spatially varying correlation
  ☆17Updated last year
• AllenInstitute / scrattch
  Single cell RNA-seq analysis for transcriptomic type characterization
  ☆37Updated 2 months ago
• theislab / scArches-reproducibility
  Reproducing result from the paper
  ☆34Updated 4 years ago
• linnarsson-lab / brainmap
  Allen Brain Atlas utilities, parsers and data structures
  ☆11Updated 8 years ago
• broadchenf / Slideseq
  ☆11Updated 6 years ago
• iancovert / persist
  ☆16Updated 10 months ago
• linnarsson-lab / FISHscale
  Spatial analysis of FISH data
  ☆30Updated last month
• theislab / interactive_plotting
  ☆21Updated 4 years ago
• feldman4 / OpticalPooledScreens_2019
  Examples and code for optical pooled screens
  ☆10Updated 2 years ago
• AllenInstitute / cell_type_mapper
  Repository for storing prototype functionality implementations for the BKP
  ☆27Updated 2 weeks ago
• klarman-cell-observatory / hdst
  ☆19Updated 5 years ago
• wanglab-broad / CAST
  CAST package
  ☆40Updated 8 months ago
• jzhoulab / quasildr
  Quasilinear data representations for single-cell omics data analysis
  ☆42Updated 2 years ago
• YeoLab / bento-tools
  A Python toolkit for subcellular analysis of spatial transcriptomics data
  ☆80Updated 2 months ago
• AllenInstitute / MTG_celltypes
  Human cortical cell types
  ☆24Updated 5 years ago
• KenLauLab / DR-structure-preservation
  A quantitative framework for evaluating data structure preservation by dimensionality reduction techniques
  ☆16Updated 4 years ago
• snap-stanford / stellar
  ☆66Updated 2 years ago
• JEFworks-Lab / STalign
  Python tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mapping
  ☆80Updated last year
• TaylorResearchLab / scedar
  Single-cell exploratory data analysis for RNA-Seq
  ☆40Updated 4 years ago
• zcang / SpaOTsc
  ☆45Updated 2 years ago
• ElementoLab / utag
  ☆36Updated last year
• BiomedicalMachineLearning / Spacell
  ☆25Updated 5 years ago
• pachterlab / LP_2021
  ☆48Updated last week