Software for processing and analyzing STARmap experiments.
☆39Aug 27, 2019Updated 6 years ago
Alternatives and similar repositories for STARmap
Users that are interested in STARmap are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆53Apr 1, 2021Updated 5 years ago
- Analysis of smFISH data☆12Aug 27, 2018Updated 7 years ago
- A GUI tool for easy and smooth visualisation and analysis of Spatial Transcriptomics datasets☆15Apr 13, 2021Updated 4 years ago
- ☆11Feb 18, 2019Updated 7 years ago
- This Python package will allow you to replicate the experiments from our research on applying Optimal Transport as a similarity metric in…☆43Feb 3, 2023Updated 3 years ago
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- The million-scale method for single-cell analysis☆10Jul 6, 2023Updated 2 years ago
- Shiny browser for single cell RNAseq data☆12Oct 7, 2022Updated 3 years ago
- ☆15Nov 9, 2018Updated 7 years ago
- Tool for sharing, browsing and visualizing single-cell data stored in the Loom file format☆38Jan 10, 2025Updated last year
- Python package for the ICML 2022 paper "Unsupervised Ground Metric Learning Using Wasserstein Singular Vectors".☆10Sep 2, 2024Updated last year
- ☆15Dec 8, 2022Updated 3 years ago
- [DEPREACATED] Python interface for data-driven microscopy with Micro-manager/Micro-Magellan☆14May 13, 2020Updated 5 years ago
- A tutorial on NMFreg applied to cerebellum data.☆12Apr 7, 2020Updated 6 years ago
- This toolbox includes routines for using principal component analysis (PCA) and independent component analysis (ICA) to extract cellular …☆26Aug 18, 2018Updated 7 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Probabilistic Alignment of Spatial Transcriptomics Experiments☆101Feb 26, 2025Updated last year
- BPNet manuscript code.☆12Dec 1, 2020Updated 5 years ago
- Code for reproducing the Sei manuscript results☆17Jan 25, 2022Updated 4 years ago
- Analysis pipeline for the adolescent mouse nervous system project☆24Jun 28, 2018Updated 7 years ago
- Several maximum likelihood ICA algorithms, including Picard☆23Sep 13, 2017Updated 8 years ago
- MERFISH decoding software☆26Aug 16, 2025Updated 7 months ago
- starfish: unified pipelines for image-based transcriptomics☆246Updated this week
- The Tomographer package implements the mathematical spatial image reconstruction of any set of read counts as described in the following …☆11May 15, 2021Updated 4 years ago
- SPROD: Spatial expression profiling de-noising☆36Jun 14, 2023Updated 2 years ago
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- code for composite in situ imaging (cisi) analysis☆12Oct 26, 2020Updated 5 years ago
- Overview of the scripts used to analyse the brainimmuneatlas data☆19Oct 20, 2020Updated 5 years ago
- Learning cell fate landscapes from spatial transcriptomics using Fused Gromov-Wasserstein☆27Oct 21, 2025Updated 5 months ago
- An automated workflow to create disease-specific Knowledge Graphs☆23Mar 24, 2026Updated 2 weeks ago
- Image processing software for CODEX: driftcompensation, deconvolution, uploading and segmentation☆52May 20, 2022Updated 3 years ago
- Generate a matrix of predictors corresponding to different behavioral variables and process a regression-based encoding model to obtain t…☆18Jul 14, 2019Updated 6 years ago
- Bead-based single-cell atac processing☆33Nov 13, 2021Updated 4 years ago
- An open-source ecosystem of hardware and software for head-fixed behavior☆13Sep 25, 2025Updated 6 months ago
- Multi-omics studies are available here☆53Jul 3, 2022Updated 3 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Introductory workshop to modeling and model fitting in psychophysics and neuroscience☆11May 9, 2019Updated 6 years ago
- Analysis repository for "Droplet-based combinatorial indexing for massive scale single-cell epigenomics"☆11Sep 30, 2019Updated 6 years ago
- Enhancing spatial transcriptomics data by predicting the expression of unmeasured genes from a dissociated scRNA-seq data☆41Jul 1, 2024Updated last year
- Population-scale single-cell RNA-seq profiling across dopaminergic neuron differentiation☆22Jun 28, 2024Updated last year
- ☆20Apr 8, 2025Updated last year
- Interactive visualization of spatial omics data☆82Updated this week
- Scientific research data management platform for storing, managing, and visualizing data from all preclinical drug discovery phases☆33Mar 31, 2026Updated last week