weallen / STARmap
Software for processing and analyzing STARmap experiments.
☆36Updated 5 years ago
Alternatives and similar repositories for STARmap:
Users that are interested in STARmap are comparing it to the libraries listed below
- ☆50Updated 4 years ago
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨☆52Updated 10 months ago
- MARIO: single-cell proteomic data matching and integration using both shared and distinct features☆23Updated last year
- Nonnegative spatial factorization for multivariate count data☆57Updated last year
- Single cell RNA-seq analysis for transcriptomic type characterization☆36Updated this week
- The Vizgen Post-processing Tool (VPT) enables users to reprocess and refine the single-cell results of MERSCOPE experiments.☆27Updated 6 months ago
- data for spacejam2☆17Updated 2 years ago
- ☆21Updated 4 years ago
- ☆16Updated 8 months ago
- Repository for storing prototype functionality implementations for the BKP☆24Updated last week
- ☆28Updated 6 months ago
- ☆45Updated 2 years ago
- ☆14Updated last week
- ☆19Updated 5 years ago
- Allen Brain Atlas utilities, parsers and data structures☆11Updated 7 years ago
- Python tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mapping☆77Updated last year
- ☆65Updated 2 years ago
- A Python toolkit for subcellular analysis of spatial transcriptomics data☆77Updated last week
- Reproducing result from the paper☆33Updated 3 years ago
- ☆50Updated 10 months ago
- Single-cell exploratory data analysis for RNA-Seq☆40Updated 3 years ago
- Examples and code for optical pooled screens☆10Updated 2 years ago
- VoxHunt: Resolving human brain organoid heterogeneity through single-cell genomic comparison to spatial brain maps☆46Updated last year
- A probabilistic cell typing algorithm for spatial transcriptomics.☆23Updated this week
- Test genes for Spatial Variation☆14Updated 3 months ago
- Spatial analysis of FISH data☆29Updated 10 months ago
- MERFISH decoding software☆26Updated last year
- ☆34Updated last year
- SpatialCorr: Identify gene sets with spatially varying correlation☆16Updated last year
- ☆46Updated 2 weeks ago