Alternatives and similar repositories for STARmap

Users that are interested in STARmap are comparing it to the libraries listed below

• CaiGroup / seqFISH-PLUS
  ☆52Updated 4 years ago
• camlab-bioml / astir
  astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨
  ☆55Updated 3 months ago
• willtownes / nsf-paper
  Nonnegative spatial factorization for multivariate count data
  ☆59Updated 2 years ago
• shuxiaoc / mario-py
  MARIO: single-cell proteomic data matching and integration using both shared and distinct features
  ☆22Updated 2 years ago
• klarman-cell-observatory / scPhere
  ☆102Updated 2 years ago
• broadchenf / Slideseq
  ☆11Updated 6 years ago
• ZhuangLab / MERlin
  MERFISH decoding software
  ☆26Updated last month
• klarman-cell-observatory / hdst
  ☆19Updated 6 years ago
• spacetx-spacejam / data
  data for spacejam2
  ☆18Updated 3 years ago
• ZhuangLab / MERFISH_analysis
  Matlab software for the analysis of MERFISH data and the construction of MERFISH probes.
  ☆50Updated 4 years ago
• suinleelab / contrastiveVI
  ☆56Updated last year
• wanglab-broad / ClusterMap
  ClusterMap for multi-scale clustering analysis of spatial gene expression
  ☆46Updated 3 months ago
• calico / scnym
  Semi-supervised adversarial neural networks for classification of single cell transcriptomics data
  ☆76Updated 9 months ago
• mbernste / SpatialCorr
  SpatialCorr: Identify gene sets with spatially varying correlation
  ☆17Updated last year
• BiomedicalMachineLearning / Spacell
  ☆26Updated 5 years ago
• theislab / trVAE
  Conditional out-of-distribution prediction
  ☆63Updated last year
• Vizgen / vizgen-postprocessing
  The Vizgen Post-processing Tool (VPT) enables users to reprocess and refine the single-cell results of MERSCOPE experiments.
  ☆33Updated last year
• snap-stanford / stellar
  ☆69Updated 2 years ago
• feldman4 / OpticalPooledScreens_2019
  Examples and code for optical pooled screens
  ☆10Updated 2 years ago
• zcang / SpaOTsc
  ☆45Updated 2 months ago
• seqscope / ficture
  ☆37Updated 2 months ago
• KrishnaswamyLab / SAUCIE
  ☆100Updated last year
• ElementoLab / utag
  ☆39Updated last year
• PMBio / SpatialDE
  Test genes for Spatial Variation
  ☆14Updated 9 months ago
• acycliq / pciSeq
  A probabilistic cell typing algorithm for spatial transcriptomics.
  ☆25Updated 2 weeks ago
• YeoLab / bento-tools
  A Python toolkit for subcellular analysis of spatial transcriptomics data
  ☆83Updated 2 months ago
• theislab / interactive_plotting
  ☆22Updated 5 years ago
• JEFworks-Lab / STalign
  Python tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mapping
  ☆88Updated last year
• KrishnaswamyLab / MELD
  Quantifying experimental perturbations at single cell resolution
  ☆110Updated last year
• AltschulerWu-Lab / scScope
  ☆48Updated 6 years ago