code for composite in situ imaging (cisi) analysis
☆12Oct 26, 2020Updated 5 years ago
Alternatives and similar repositories for CISI
Users that are interested in CISI are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆27Oct 12, 2024Updated last year
- ☆18Aug 14, 2017Updated 8 years ago
- A tutorial on NMFreg applied to cerebellum data.☆12Apr 7, 2020Updated 5 years ago
- Building Gene Sets and Mapping mFISH Data☆16Aug 20, 2025Updated 7 months ago
- ☆13Oct 17, 2021Updated 4 years ago
- Tools and scripts for EASI-FISH image data analysis☆17Oct 19, 2022Updated 3 years ago
- spatial transcriptome, single cell☆74Mar 18, 2023Updated 3 years ago
- scGRO-seq analyses codes☆13Jan 9, 2024Updated 2 years ago
- An open-source ecosystem of hardware and software for head-fixed behavior☆13Sep 25, 2025Updated 6 months ago
- COMET Single-Cell Marker Detection tool☆32Jun 21, 2022Updated 3 years ago
- ☆10Apr 30, 2019Updated 6 years ago
- Data processing and analysis workflow for GAGE-seq, a coassay of single-cell HiC and single-cell RNA-seq☆15Oct 6, 2025Updated 5 months ago
- GPUmatrix: An R package for algebra using GPU☆37Jan 16, 2025Updated last year
- ☆21Mar 18, 2026Updated last week
- ☆72May 28, 2025Updated 9 months ago
- Simple R script for plotting ideograms and annotating with bed files.☆12Sep 21, 2015Updated 10 years ago
- ☆12Nov 2, 2025Updated 4 months ago
- ☆15Mar 7, 2026Updated 2 weeks ago
- Genomic Features in Python from BioConductor's AnnotationHub☆22Mar 16, 2026Updated last week
- R API and htmlwidget for Vitessce☆44Aug 13, 2025Updated 7 months ago
- A generative topic model that facilitates integrative analysis of large-scale single-cell RNA sequencing data.☆55Jan 17, 2022Updated 4 years ago
- Bootstrap imputation for scRNAseq data☆12Jul 18, 2020Updated 5 years ago
- repo to explore spatial data in R/Bioconductor and Python☆12Dec 3, 2019Updated 6 years ago
- ☆38Jan 21, 2026Updated 2 months ago
- ☆47Jul 24, 2025Updated 8 months ago
- ☆30Oct 4, 2024Updated last year
- A flexible and extensible API for annotated 2D matrix data stored in multiple underlying formats.☆83Mar 17, 2026Updated last week
- Compact hyperdrive for up to 16 independently movable electrodes☆18Aug 25, 2019Updated 6 years ago
- Reconstruct big images from overlapping tiled images on a Spark cluster.☆34Oct 17, 2023Updated 2 years ago
- Multi-omics studies are available here☆53Jul 3, 2022Updated 3 years ago
- Code for "Learning with minibatch Wasserstein: asymptotic and gradient properties".☆13Apr 9, 2021Updated 4 years ago
- ☆12Jul 15, 2022Updated 3 years ago
- An R interface to the NiftyReg medical image registration library☆45Feb 24, 2026Updated last month
- ☆21Jul 4, 2017Updated 8 years ago
- Allen Institute mouse eye tracker.☆13Sep 7, 2018Updated 7 years ago
- An interpretable simulator that generates realistic single-cell gene expression count data with gene correlations recapitulated☆27Nov 2, 2024Updated last year
- Example datasets for DeepPoseKit☆10Nov 10, 2019Updated 6 years ago
- ☆13Feb 27, 2024Updated 2 years ago
- R package☆27Aug 16, 2020Updated 5 years ago