CRISPR Indel, base edit analysis
☆11Aug 1, 2020Updated 6 years ago
Alternatives and similar repositories for CRISPR_toolkit
Users that are interested in CRISPR_toolkit are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Modelling insertion efficiency for Prime Insertion Experiments☆13Apr 1, 2024Updated 2 years ago
- CHANGE-seq analysis pipeline☆12Sep 14, 2026Updated last month
- ☆61Sep 27, 2021Updated 5 years ago
- Source codes and examples for DeepPrime☆15Dec 17, 2024Updated last year
- Variational Auto Encoders for learning binding signatures of transcription factors☆15Mar 14, 2024Updated 2 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Calculates the Variant Allele Fraction of variants in VCF files☆19Nov 28, 2024Updated last year
- ☆16Apr 18, 2025Updated last year
- ☆16May 30, 2021Updated 5 years ago
- Digenome-toolkit ver2.☆15Nov 1, 2021Updated 4 years ago
- Python library for genome editing, CRISPR gRNA design and prediction☆22Dec 2, 2025Updated 10 months ago
- for a tutorial at useR2018☆17Jul 9, 2018Updated 8 years ago
- Python script for calling SNPs, MNPs, and indels in mitochondrial DNA.☆10Apr 19, 2016Updated 10 years ago
- ☆10Jan 30, 2020Updated 6 years ago
- A Similarity-Guided Alignment Algorithm☆31Feb 7, 2026Updated 8 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Alignment-free detection of structural variations and viral integrations in circulating tumor DNA☆17Nov 11, 2021Updated 4 years ago
- ☆25Jun 5, 2026Updated 4 months ago
- Control an Illumina HiSeq 2500 System☆23Sep 18, 2026Updated last month
- ☆11Mar 6, 2025Updated last year
- A comprehensive analysis tool for Ribo-seq and small RNA-seq data☆10Jun 22, 2020Updated 6 years ago
- Deep conditional autoregressive models for genome editing sequence-to-sequence problems☆10Jun 29, 2021Updated 5 years ago
- Python based Graphical User Interface for generating input files for and running molecular dynamic simulation.☆10Aug 27, 2024Updated 2 years ago
- splicing and feature maps for RBPs☆25Oct 4, 2026Updated last week
- ☆10Sep 11, 2020Updated 6 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ggDoubleHeat: A heatmap-like visualization tool☆16Sep 21, 2026Updated 3 weeks ago
- A Snakemake workflow for recovery of plastid genomes from metagenomic samples☆11Nov 16, 2024Updated last year
- ChIP-seq and ATAC-seq analysis☆13Jun 17, 2024Updated 2 years ago
- RNAseq pipeline for alternative splicing junctions☆15Mar 26, 2026Updated 6 months ago
- Software developed at the Max Planck Institut für Eisenforschung☆13Jul 18, 2025Updated last year
- scRNA-seq Shiny App☆14May 1, 2023Updated 3 years ago
- eVOLVER Hardware (PCB, 3D printed parts)☆12Jun 25, 2026Updated 3 months ago
- An unbiased method for genome-wide CBE off-targets assessment☆14Mar 9, 2023Updated 3 years ago
- Efficient Sequential and Batch Estimation of Univariate and Bivariate Probability Density Functions and Cumulative Distribution Functions…☆18Aug 31, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆31Jan 6, 2026Updated 9 months ago
- Analysis of deep sequencing data for rapid and intuitive interpretation of genome editing experiments☆357Oct 8, 2026Updated last week
- Software used to design guide RNA sequences for CRISPR/Cas9 genome editing☆16Apr 13, 2023Updated 3 years ago
- Examples and code for optical pooled screens☆10Dec 8, 2022Updated 3 years ago
- Fast python code to merge paired-end reads☆13Oct 29, 2021Updated 4 years ago
- MASIC generates selected ion chromatograms (SICs) for all of the parent ions chosen for fragmentation in an LC-MS/MS analysis, characteri…☆19Dec 4, 2025Updated 10 months ago
- ChIP-seq peak-calling, QC and differential analysis pipeline (Snakemake port of the nextflow pipeline at https://nf-co.re/chipseq).☆26Feb 3, 2022Updated 4 years ago