yunguan-wang / SPROD
SPROD: Spatial expression profiling de-noising
☆36Updated last year
Alternatives and similar repositories for SPROD
Users that are interested in SPROD are comparing it to the libraries listed below
Sorting:
- Spatial direct messaging detected by bivariate Moran☆26Updated 2 weeks ago
- PhyloVelo, Phylogeny-based transcriptomic velocity of single cells☆43Updated last year
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 2 years ago
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆61Updated last year
- Integrative and Reference-Informed Spatial Domain Detection for Spatial Transcriptomics☆35Updated 3 months ago
- Single cell omics biology annotations☆51Updated 3 weeks ago
- ☆51Updated 8 months ago
- GASTON: deep learning algorithm learns "topography" of a tissue slice from spatial transcriptomics data☆51Updated 3 months ago
- Collection of computational tools for cell-cell communication inference for single-cell and spatially resolved omics☆48Updated this week
- MAGIC - imputation and de-noising single-cell RNA seq data sets☆27Updated 5 years ago
- Identify genes with spatial expression trends in single-cell gene expression data☆50Updated 7 years ago
- Gene group activity utility functions for Scanpy☆74Updated 4 months ago
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆40Updated 4 months ago
- NicheDE is a method that detects context dependent changes in gene expression in spatial transcriptomic data.☆18Updated 7 months ago
- Predict RNA velocity through deep learning☆69Updated last year
- STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using …☆27Updated last year
- Gene regulatory network containing signed transcription factor-target gene interactions☆77Updated last year
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆36Updated 4 years ago
- ☆43Updated last year
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆60Updated 11 months ago
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆34Updated 4 years ago
- Principal analysis code used in for analysis of single cell RNAseq of primary untreated colon cancer. As described in: "Spatially organiz…☆39Updated 3 years ago
- inferring regulatory cellular dynamics☆41Updated last week
- ☆51Updated 2 years ago
- R implementation of GeneTrajectory☆58Updated last year
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆28Updated 5 months ago
- Awesome list of tools and methods to perform spatial transcriptomic data analysis.☆42Updated 3 years ago
- Collection of scripts for analysis of pan fetal immune atlas☆26Updated 2 years ago
- Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics☆35Updated last week
- CellANOVA: Cell State Space Analysis of Variance for signal recovery in single cell batch integration☆47Updated 6 months ago