SPROD: Spatial expression profiling de-noising
☆36Jun 14, 2023Updated 3 years ago
Alternatives and similar repositories for SPROD
Users that are interested in SPROD are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆19Updated this week
- ☆33May 4, 2025Updated last year
- Deciphering tumor ecosystems at super-resolution from spatial transcriptomics with TESLA☆68Mar 18, 2024Updated 2 years ago
- Single-cell Graph Cuts Optimization☆16Apr 27, 2024Updated 2 years ago
- A database of useful gene signatures for single-cell analysis☆29May 19, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆136Feb 11, 2024Updated 2 years ago
- Single-cell Spatial Transcriptomics Imputation via Style Transfer☆22Jun 3, 2026Updated last month
- Probabilistic factor models for spatially correlated data. Includes nonnegative and real-valued versions.☆19Dec 5, 2024Updated last year
- ☆162Mar 19, 2024Updated 2 years ago
- Reworked clustering metrics for assessing performance in imbalanced settings☆18Jun 3, 2024Updated 2 years ago
- ☆142Jun 25, 2026Updated last month
- We design a method for heritability estimation, namely LD Eigenvalue Regression (LDER), which extends the LDSC method and provides more a…☆13Aug 20, 2025Updated 11 months ago
- R package for decontaminating the spot swapping effect and recovering true expression in spatial transcriptomics data☆39Jan 13, 2026Updated 6 months ago
- ☆21Jul 30, 2024Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- a variational autoencoder method for clustering single-cell mutation data☆11Apr 17, 2024Updated 2 years ago
- CeLEry: cell location recovery in single-cell RNA sequencing☆38Feb 14, 2025Updated last year
- Imputation method for scRNA-seq based on low-rank approximation☆80Dec 14, 2023Updated 2 years ago
- The benchmarking of spatial transcriptomics deconvolution methods☆34Feb 24, 2023Updated 3 years ago
- netNMF-sc: A network regularization algorithm for dimensionality reduction and imputation of single-cell expression data☆23Apr 19, 2021Updated 5 years ago
- ☆12Mar 18, 2026Updated 4 months ago
- R package for transfer learning of single-cell RNA-seq denoising☆31Jun 14, 2022Updated 4 years ago
- SpaGCN: Integrating gene expression, spatial location and histology to identify spatial domains and spatially variable genes by graph con…☆265Feb 9, 2026Updated 5 months ago
- SpatialGlue is a novel deep learning methods for spatial multi-omics data integration.☆92Jun 24, 2024Updated 2 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Python implementation of Gene Trajectory☆30Sep 4, 2024Updated last year
- Bayesian model for clustering and enhancing the resolution of spatial gene expression experiments.☆180Jan 8, 2026Updated 6 months ago
- ☆42Dec 4, 2023Updated 2 years ago
- Supplementary data for Petti, et al 2019 scRNA mutation publication☆16Feb 1, 2023Updated 3 years ago
- Gene group activity utility functions for Scanpy☆108Dec 21, 2024Updated last year
- R package that automatically classifies the cells in the scRNA data by segregating non-malignant cells of tumor microenviroment from the …☆127Mar 19, 2026Updated 4 months ago
- Software for processing and analyzing STARmap experiments.☆39Aug 27, 2019Updated 6 years ago
- Gene expression deconvolution using dampened weighted least squares☆37Feb 4, 2021Updated 5 years ago
- Unsupervised cell functional annotation for single-cell RNA-Seq☆22Jan 11, 2023Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- QBRC Somatic Mutation Calling Pipeline☆16Feb 8, 2022Updated 4 years ago
- ☆15Jun 27, 2025Updated last year
- ☆15Aug 5, 2022Updated 3 years ago
- An algorithm used to classify the cell types from single cell rna sequence data.☆10Jan 24, 2021Updated 5 years ago
- Data and analysis for the Splatter paper☆31Dec 4, 2017Updated 8 years ago
- Spatial-eXpression-R: Cell type identification (including cell type mixtures) and cell type-specific differential expression for spatial …☆473Jan 22, 2026Updated 6 months ago
- Interactive applications of stlearn☆16May 1, 2023Updated 3 years ago