Image processing software for CODEX: driftcompensation, deconvolution, uploading and segmentation
☆53May 20, 2022Updated 4 years ago
Alternatives and similar repositories for CODEX
Users that are interested in CODEX are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆11Mar 2, 2021Updated 5 years ago
- VorteX Clustering Environment - Java graphical tool for single-cell analysis, clustering and visualization. Latest release:☆34Apr 17, 2023Updated 3 years ago
- R script for calculating the SpatialScore as described in our manuscript: "Immune cell topography predicts response to PD-1 blockade in c…☆17Sep 26, 2021Updated 4 years ago
- ☆43May 11, 2026Updated last week
- Spatially-resolved Transcriptomics via Epitope Anchoring☆20Apr 1, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆71Jan 18, 2023Updated 3 years ago
- Automate unsupervised machine learning cell type identification using both protein expressions and cell spatial neighborhood information …☆40May 7, 2024Updated 2 years ago
- Helper functions for working with inForm data.☆23May 3, 2022Updated 4 years ago
- ☆17Mar 18, 2025Updated last year
- Fast motif matching in R☆47Jan 24, 2024Updated 2 years ago
- ☆14Feb 12, 2026Updated 3 months ago
- Integrating temporal gene expression modalities for trajectory inference and disease prediction☆10Sep 20, 2022Updated 3 years ago
- The R package "sarlacc" contains a pipeline to analyse nanopore sequencing data. It trims adapter sequences, retrieves optional UMI's, cl…☆15Feb 27, 2019Updated 7 years ago
- Code accompanying our manuscript "Coordinated cellular neighborhoods orchestrate antitumoral immunity at the colorectal cancer invasive f…☆72Nov 4, 2024Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- CODEX data processing code☆12Jul 1, 2025Updated 10 months ago
- ☆66May 12, 2026Updated last week
- ENHANCE: Accurate denoising of single-cell RNA-Seq data (Python implementation)☆14Jun 5, 2019Updated 6 years ago
- Spatial Image Analysis of Tissues☆15Dec 8, 2022Updated 3 years ago
- MARIO: single-cell proteomic data matching and integration using both shared and distinct features☆23Jan 9, 2026Updated 4 months ago
- Single cell interactive plotting tools☆24Jun 12, 2020Updated 5 years ago
- Course website for Genomic Data Visualization 2022☆16Dec 28, 2022Updated 3 years ago
- Multi-omics studies are available here☆53Jul 3, 2022Updated 3 years ago
- ☆36Jun 4, 2024Updated last year
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- ☆28Jan 31, 2026Updated 3 months ago
- Statistical analysis for spatial omics data☆11Jul 30, 2022Updated 3 years ago
- Notebooks for generating figures in "Progressive Plasticity During Colorectal Cancer Metastasis"☆22Dec 1, 2024Updated last year
- ☆15Aug 17, 2023Updated 2 years ago
- MERFISH decoding software☆26Aug 16, 2025Updated 9 months ago
- This repository contains the code used to generate figures and perform analysis for the manuscript titled "Transcriptomic and Spatial Pro…☆90Oct 9, 2024Updated last year
- ☆12Aug 2, 2020Updated 5 years ago
- ☆11Feb 18, 2019Updated 7 years ago
- A pixel classification based multiplexed image segmentation pipeline☆107Dec 5, 2023Updated 2 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Source codes and example scripts for chromatin tracing projects in Zhuang lab☆29Jan 27, 2022Updated 4 years ago
- Implementation of efficient Graph-based Image segmentation paper☆10May 19, 2020Updated 6 years ago
- This is the repository for SeCNV, a single cell copy number profiling tool.☆12Dec 12, 2024Updated last year
- Kinase-Substrate Enrichment Analysis (KSEA) App☆10May 2, 2017Updated 9 years ago
- amplicon/smMIP mapping and analysis pipeline☆11Dec 8, 2022Updated 3 years ago
- Identification of persistent local patterns in spatial omics data☆17May 6, 2025Updated last year
- Clustering scRNAseq by genotypes☆204Apr 30, 2026Updated 3 weeks ago