SpatialTranscriptomicsResearch / st_viewer
A GUI tool for easy and smooth visualisation and analysis of Spatial Transcriptomics datasets
☆13Updated 3 years ago
Alternatives and similar repositories for st_viewer:
Users that are interested in st_viewer are comparing it to the libraries listed below
- An R/Bioconductor package that implements a single-sample molecular phenotyping approach☆41Updated 3 months ago
- Clone of the Bioconductor repository for the scRNAseq package.☆24Updated last month
- An R implementation of the Gene Frequency - Inverse Cell Frequency method for single cell data normalization☆15Updated 2 years ago
- COMET Single-Cell Marker Detection tool☆31Updated 2 years ago
- Automated marker-based annotation of cell types☆13Updated 2 years ago
- CellR: single-cell RNA-Seq guided deconvolution of cellular composition from bulk-tissue RNA-Seq☆15Updated 3 years ago
- ☆38Updated 4 years ago
- Single-Cell Sequencing Quality Control and Processing Software☆30Updated 5 years ago
- A study to compare methods for clustering of scRNA-seq data☆42Updated 7 months ago
- Inferring gene co-expression networks from single cell gene expression data☆24Updated 2 years ago
- A deep learning-based tool for alignment and integration of single cell genomic data across multiple datasets, species, conditions, batch…☆37Updated 3 years ago
- epigenome analysis to rank transcription factors☆13Updated 5 years ago
- Negative binomial regression for Spatial Transcriptomics data as described in Maaskola et al. 2018☆21Updated 6 years ago
- Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas☆25Updated last year
- Predicted cell-cell interactions of the aging mouse brain☆20Updated 5 years ago
- Reconstruction of higher order chromatin from scRNA-seq and scATAC-seq☆13Updated this week
- scMatch: a single-cell gene expression profile annotation tool using reference datasets☆21Updated 4 years ago
- A python tool to do comparative analysis of mulitple single cell datasets.☆21Updated 5 years ago
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆44Updated last year
- ☆28Updated 6 years ago
- scRNAseq integration with triplet neural networks☆40Updated 2 years ago
- CiteFuse:☆27Updated 2 years ago
- SPATA Package for spatial gene expression analysis☆21Updated 2 years ago
- An r package that works as a wrapper to homologene☆42Updated last year
- An analytics package for single cell data☆22Updated 2 years ago
- Inference of switch-like differential expression along single-cell trajectories☆19Updated 7 years ago
- Human brain, >200,000 nuclei☆24Updated 3 years ago
- Batch Effect Correction of RNA-seq Data through Sample Distance Matrix Adjustment☆17Updated 3 years ago
- Scripts to run and benchmark scRNA-seq cell cluster labeling methods☆47Updated 4 years ago
- Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours☆26Updated 4 years ago