SpatialTranscriptomicsResearch / st_viewer
A GUI tool for easy and smooth visualisation and analysis of Spatial Transcriptomics datasets
☆13Updated 4 years ago
Alternatives and similar repositories for st_viewer
Users that are interested in st_viewer are comparing it to the libraries listed below
Sorting:
- A deep learning-based tool for alignment and integration of single cell genomic data across multiple datasets, species, conditions, batch…☆38Updated 3 years ago
- ☆41Updated 4 years ago
- Automated marker-based annotation of cell types☆13Updated 2 years ago
- Predicted cell-cell interactions of the aging mouse brain☆20Updated 5 years ago
- Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas☆25Updated last year
- epigenome analysis to rank transcription factors☆13Updated 5 years ago
- Moana: Robust cell type classification of single-cell RNA-Seq data☆24Updated 6 years ago
- A study to compare methods for clustering of scRNA-seq data☆43Updated 9 months ago
- An R implementation of the Gene Frequency - Inverse Cell Frequency method for single cell data normalization☆15Updated 2 years ago
- Dynamic models for single-cell RNA-seq time series.☆40Updated 6 years ago
- scRNAseq integration with triplet neural networks☆40Updated 2 years ago
- Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data☆21Updated last year
- COMET Single-Cell Marker Detection tool☆31Updated 2 years ago
- scMatch: a single-cell gene expression profile annotation tool using reference datasets☆21Updated 4 years ago
- post-clustering differential expression test☆35Updated 5 years ago
- CiteFuse:☆28Updated 2 years ago
- ☆16Updated 3 years ago
- Single-Cell Sequencing Quality Control and Processing Software☆30Updated 5 years ago
- Negative binomial regression for Spatial Transcriptomics data as described in Maaskola et al. 2018☆22Updated 6 years ago
- kallisto index tag extractor☆20Updated 5 years ago
- ☆37Updated 8 years ago
- Method for identifying trait-relevant gene annotations from GWAS summary statistics.☆17Updated 2 years ago
- RNA velocity validation☆22Updated 3 years ago
- Inferring gene co-expression networks from single cell gene expression data☆24Updated 2 years ago
- Multi-study integration of cellular trajectories☆19Updated 4 years ago
- CellR: single-cell RNA-Seq guided deconvolution of cellular composition from bulk-tissue RNA-Seq☆18Updated 3 years ago
- Algorithms for single-cell analysis☆29Updated 3 years ago
- Scripts to run and benchmark scRNA-seq cell cluster labeling methods☆47Updated 4 years ago
- Probabilistic gene expression barcodes for cell type annotation☆25Updated 3 years ago
- Mean Alterations Using Discrete Expression☆14Updated last year