FunctionLab / sei-manuscriptLinks
Code for reproducing the Sei manuscript results
☆17Updated 3 years ago
Alternatives and similar repositories for sei-manuscript
Users that are interested in sei-manuscript are comparing it to the libraries listed below
Sorting:
- ☆19Updated 2 years ago
- ☆26Updated 2 months ago
- High-definition modeling of chromatin + transcriptomics data☆24Updated 2 months ago
- ☆34Updated 2 years ago
- PECA is a software for inferring context specific gene regulatory network from paired gene expression and chromatin accessibility data☆43Updated last year
- Code to reproduce analyses in Nasser, Bergman, Fulco, Guckelberger, Doughty et al Nature 2021☆15Updated 4 years ago
- This is the package of Yuanfang's winning algorithm in the ENCODE-DREAM in vivo Transcription Factor Binding Site Prediction Challenge☆20Updated 5 years ago
- Epimap processing and analysis code repository☆33Updated 2 years ago
- Python package to predict enhancer-gene interactions supervised on CRISPRi data☆14Updated last year
- Transcription Factor Binding Prediction from ATAC-seq and scATAC-seq with Deep Neural Networks☆28Updated 2 months ago
- A method for analyzing scATAC-seq experiments.☆31Updated 3 months ago
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆29Updated 5 years ago
- Benchmark of GRNs using the GRETA pipeline☆24Updated 3 months ago
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆19Updated last year
- Bioinformatic tool for Splice site Strength Estimation using RNA-seq☆16Updated 2 weeks ago
- ☆49Updated 10 months ago
- Whole mouse brain snATAC seq analysis☆26Updated 2 months ago
- SCRIP(Single Cell Regulatory network Inference using ChIP-seq) is a tool for evaluating the binding enrichment of specific TR at single-c…☆20Updated 11 months ago
- ☆30Updated 2 years ago
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆41Updated 5 months ago
- Saluki, a method to predict mRNA half-lives from sequence☆24Updated 2 years ago
- Weighted Nearest Neighbors Analysis implemented in Python (pyWNN)☆17Updated 3 years ago
- Use an ensemble of variant callers to call variants from ATAC-seq data☆23Updated last month
- Snakemake pipeline for plate scATAC-seq processing☆26Updated last year
- Data of genome annotation from full-stack ChromHMM model trained with 1032 datasets from 127 reference epigenomes☆36Updated 11 months ago
- A portable, flexible, parallelized tool for complete processing of massively parallel reporter assay data☆32Updated 5 months ago
- ☆12Updated 2 years ago
- Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis☆33Updated 3 years ago
- single-cell Nucleosome Methylation Transcription☆13Updated 7 years ago
- TF analysis from epigenetic and Hi-C data☆17Updated 2 months ago