FunctionLab / sei-manuscriptLinks
Code for reproducing the Sei manuscript results
☆17Updated 4 years ago
Alternatives and similar repositories for sei-manuscript
Users that are interested in sei-manuscript are comparing it to the libraries listed below
Sorting:
- ☆27Updated 9 months ago
- ☆18Updated 3 years ago
- Python package to predict enhancer-gene interactions supervised on CRISPRi data☆15Updated 2 years ago
- ☆36Updated 3 years ago
- High-definition modeling of chromatin + transcriptomics data☆26Updated last week
- PECA is a software for inferring context specific gene regulatory network from paired gene expression and chromatin accessibility data☆45Updated 3 months ago
- Code to reproduce analyses in Nasser, Bergman, Fulco, Guckelberger, Doughty et al Nature 2021☆16Updated 4 years ago
- ☆69Updated 2 months ago
- Epimap processing and analysis code repository☆33Updated 3 years ago
- ☆25Updated 4 months ago
- ☆13Updated 4 years ago
- QBRC Neoantigen calling pipeline with CSiN calculation embedded☆26Updated 3 years ago
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆30Updated 5 years ago
- ☆19Updated last year
- SnapHiC: Single Nucleus Analysis Pipeline for Hi-C Data☆42Updated 2 years ago
- Predicting gene expression levels from genomic sequences☆54Updated 5 years ago
- https://www.biorxiv.org/content/10.1101/2023.07.03.547592v2☆32Updated last year
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆24Updated last year
- mouse_fullStack_annotations☆13Updated 2 years ago
- Toolset for training quantitative sequence to function models.☆23Updated last year
- splicing and feature maps for RBPs☆25Updated 3 years ago
- DeepLoop robustly identifies enhancer-promoter interactions from low-depth and single-cell Hi-C data☆34Updated 10 months ago
- A method for analyzing scATAC-seq experiments.☆34Updated 7 months ago
- Enformer Celltyping is a tensorflow, multi-headed attention based model that incorporates distal effects of Deoxyribonucleic Acid (DNA) i…☆15Updated 7 months ago
- Deep learning model built to quantitatively predict the activities of developmental and housekeeping enhancers from DNA sequence in Droso…☆72Updated 2 years ago
- Bioinformatic tool for Splice site Strength Estimation using RNA-seq☆20Updated 6 months ago
- Use an ensemble of variant callers to call variants from ATAC-seq data☆23Updated 8 months ago
- Fast motif matching in R☆46Updated 2 years ago
- R package for transfer learning of single-cell RNA-seq denoising☆30Updated 3 years ago
- Snakemake pipeline for plate scATAC-seq processing☆26Updated 2 years ago