FunctionLab / sei-manuscriptLinks
Code for reproducing the Sei manuscript results
☆17Updated 3 years ago
Alternatives and similar repositories for sei-manuscript
Users that are interested in sei-manuscript are comparing it to the libraries listed below
Sorting:
- ☆18Updated 3 years ago
- ☆26Updated 8 months ago
- ☆36Updated 3 years ago
- High-definition modeling of chromatin + transcriptomics data☆26Updated 8 months ago
- PECA is a software for inferring context specific gene regulatory network from paired gene expression and chromatin accessibility data☆45Updated 2 months ago
- Python package to predict enhancer-gene interactions supervised on CRISPRi data☆15Updated 2 years ago
- ☆13Updated 4 years ago
- Tools for sgRNA calling in direct capture Perturb-seq data☆39Updated 2 years ago
- Code to reproduce analyses in Nasser, Bergman, Fulco, Guckelberger, Doughty et al Nature 2021☆16Updated 4 years ago
- Use an ensemble of variant callers to call variants from ATAC-seq data☆23Updated 7 months ago
- ☆12Updated 2 years ago
- ☆69Updated last month
- R package for transfer learning of single-cell RNA-seq denoising☆30Updated 3 years ago
- ☆24Updated 3 months ago
- Fast motif matching in R☆46Updated last year
- Snakemake pipeline for plate scATAC-seq processing☆26Updated 2 years ago
- Chromatin interaction aware gene regulatory modeling with graph attention networks☆28Updated 2 years ago
- RAGE-seq scripts☆18Updated 4 years ago
- Toolset for training quantitative sequence to function models.☆23Updated last year
- QBRC Neoantigen calling pipeline with CSiN calculation embedded☆25Updated 3 years ago
- Weighted Nearest Neighbors Analysis implemented in Python (pyWNN)☆19Updated 4 years ago
- Epimap processing and analysis code repository☆33Updated 3 years ago
- This is the package of Yuanfang's winning algorithm in the ENCODE-DREAM in vivo Transcription Factor Binding Site Prediction Challenge☆20Updated 5 years ago
- Negative binomial regression for Spatial Transcriptomics data as described in Maaskola et al. 2018☆22Updated 7 years ago
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆30Updated 5 years ago
- SnapHiC: Single Nucleus Analysis Pipeline for Hi-C Data☆42Updated 2 years ago
- https://www.biorxiv.org/content/10.1101/2023.07.03.547592v2☆32Updated 11 months ago
- Saluki, a method to predict mRNA half-lives from sequence☆27Updated 3 years ago
- <<------ Use SnapATAC!!☆26Updated 6 years ago
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆41Updated 11 months ago