Shiny browser for single cell RNAseq data
☆12Oct 7, 2022Updated 3 years ago
Alternatives and similar repositories for shiny_cell_browser
Users that are interested in shiny_cell_browser are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Shiny app for visualization, exploration of mouse brain single cell gene expression☆12Oct 31, 2018Updated 7 years ago
- ChromSCape☆14Jul 30, 2025Updated 8 months ago
- A Shiny tool to define the cell-type of action by integrating single cell expression data with GWAS☆12Nov 1, 2018Updated 7 years ago
- Functional Enrichment Analysis and Network Construction☆10May 13, 2020Updated 5 years ago
- A web-based interactive (wizard style) application to perform a guided single-cell RNA-seq data analysis and clustering based on Seurat v…☆33Sep 14, 2020Updated 5 years ago
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- method to estimate PCR duplication rate from high-throughput sequencing data☆15Sep 22, 2017Updated 8 years ago
- Machine learning use cases for teaching☆13Jul 12, 2017Updated 8 years ago
- Single-cell Scalable Visualization and Analytics☆27Mar 26, 2019Updated 7 years ago
- Data and code for the paper "Developmental diversification of cortical inhibitory interneurons"☆24Dec 20, 2018Updated 7 years ago
- ☆21Nov 21, 2016Updated 9 years ago
- Scripts used for the Differential NicheNet analyses in the Liver Atlas paper Guilliams et al., Cell 2022☆10Jan 12, 2022Updated 4 years ago
- CWL for GDC DNASeq workflows☆23Mar 30, 2026Updated 2 weeks ago
- Model-based analysis of APA using 3' end-linked reads☆12Aug 14, 2021Updated 4 years ago
- A multi action button for Shiny.☆17Sep 2, 2020Updated 5 years ago
- Serverless GPU API endpoints on Runpod - Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- ImageJ plugin for neurite tracing and analysis☆14Mar 19, 2020Updated 6 years ago
- Seven Bridges API Client, CWL Schema, Meta Schema, and SDK Helper in R☆36Jan 28, 2022Updated 4 years ago
- Parse command-line arguments and simple variable interpolation☆17Feb 6, 2026Updated 2 months ago
- Community-maintained list of resources that the CI4CC organization and the larger cancer informatics community have found useful or are d…☆22Sep 24, 2018Updated 7 years ago
- Primer Seek in RNA-Seq. Designs RT-PCR primers that validate alternative splicing events from RNA-Seq data.☆13Nov 27, 2016Updated 9 years ago
- Jupyter Notebook extension to run cells contained in a section with one click, then freeze them☆12Mar 9, 2026Updated last month
- Prioritize structural variants based on CADD scores☆29May 7, 2020Updated 5 years ago
- Software for processing and analyzing STARmap experiments.☆39Aug 27, 2019Updated 6 years ago
- Easy to Annotate Helitrons Unix-like command line.☆10Feb 14, 2024Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- A hacky little interface to call the Enrichr functional enrichment tool from R.☆13Dec 13, 2018Updated 7 years ago
- A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method☆43Feb 9, 2021Updated 5 years ago
- R functions for automation of biomarker discovery based on processing downstream of large LC-MS datasets from any peak picking software☆10May 17, 2017Updated 8 years ago
- ☆19Sep 25, 2024Updated last year
- A local realigner around InDels for MethylSeq data☆12Apr 28, 2016Updated 9 years ago
- Code sharing related to DREAM challenges☆23Feb 21, 2017Updated 9 years ago
- A set of notebooks to introduce neuroscientists to concepts in machine learning.☆15Aug 30, 2017Updated 8 years ago
- Fast Structural Variation Detection Toolbox☆19Feb 16, 2015Updated 11 years ago
- Peak calling tool for CLIP-seq data☆14Apr 7, 2021Updated 5 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- R interface to the JBrowse 2 Linear Genome View.☆39Mar 12, 2024Updated 2 years ago
- ☆11Jul 13, 2018Updated 7 years ago
- A nextflow pipeline for calling exome CNVs☆13Feb 24, 2026Updated last month
- Rails application for storing and parsing clinical exome VCF files. Gene annotations can be retrieved via Biomart integration from Ensemb…☆10May 7, 2017Updated 8 years ago
- de novo assembly of RNA-seq data using ABySS☆34Mar 10, 2026Updated last month
- A BioWDL pipeline for processing RNA-seq data, starting with FASTQ files to produce expression measures and VCFs. Category:Multi-Sample☆33Mar 10, 2023Updated 3 years ago
- CRAM format specification and java API for read data.☆59Oct 2, 2018Updated 7 years ago