lawrenson-lab / AtlasEndometriosisLinks
A single-cell transcriptomic analysis of endometriosis, endometriomas, eutopic endometrial samples and uninvolved ovary tissues highlights cell populations characteristic of these tissue types. Transcriptional and cellular heterogeneity across tissues suggests novel therapeutic targets and biomarkers for this disease.
☆15Updated 3 years ago
Alternatives and similar repositories for AtlasEndometriosis
Users that are interested in AtlasEndometriosis are comparing it to the libraries listed below
Sorting:
- Code associated with MIX-seq manuscript☆15Updated 5 years ago
- Code to go along with https://doi.org/10.1016/j.cell.2022.09.010☆21Updated 3 years ago
- Analaysis for the batch correction paper☆12Updated 8 months ago
- ☆16Updated 3 years ago
- Workflow to reproduce results and figures for the second BeatAML manuscript☆13Updated 3 years ago
- Code to reproduce analysis of Milo manuscript☆14Updated 3 years ago
- ☆12Updated 5 years ago
- A GUI tool for easy and smooth visualisation and analysis of Spatial Transcriptomics datasets☆15Updated 4 years ago
- Hierarchical classification of cells☆28Updated last year
- Image processing pipeline for spatial projects☆17Updated 2 years ago
- ☆15Updated 3 years ago
- Individual level Differential Expression Analysis for Single cells☆26Updated 3 years ago
- CellAnn☆12Updated 2 years ago
- Analysis of Single Cell Expression, Normalization and Differential expression☆12Updated 5 years ago
- Breast Cancer Single Cell Atlas☆12Updated 3 years ago
- Variant impact phenotyping using Perturb-seq☆10Updated last year
- Reproducibility code for the manuscript: 'Inferring and perturbing cell fate regulomes in human cerebral organoids☆30Updated 2 years ago
- An R package for single-cell CRISPR screen data analysis emphasizing statistical rigor, massive scalability, and ease of use.☆35Updated 4 months ago
- Automated marker-based annotation of cell types☆13Updated 3 years ago
- analyses of scRNAseq and spatial transcriptomics dataset of developing human pancreas at multiple gestational stages☆10Updated 2 years ago
- Prostate Cancer Alteration Signature Analysis https://xsliulab.github.io/PC_CNA_signature/☆13Updated 4 years ago
- An R package for adaptive sum of powered score test(ASPU) in genetic association studies.☆12Updated 4 years ago
- Kidney Epigenome and Transcriptome-based multi-stage Prioritization☆17Updated 3 years ago
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆30Updated 5 years ago
- Zhang, et al, Nature Immunology, 2019. Use single-cell transcriptomics and proteomics to study autoimmune diseases.☆20Updated 10 months ago
- Code required to reproduce analysis of the single cell Cut and Tag data in the resource paper (Bartosovic et. al., 2020)☆13Updated 4 years ago
- Data processing and analysis scripts for our spatial profiling of embryos using seqFISH☆17Updated 2 years ago
- Python package with CLI for the analysis of single cell methylation data. Now known as MethSCAn: https://github.com/anders-biostat/MethSC…☆12Updated last year
- The Tomographer package implements the mathematical spatial image reconstruction of any set of read counts as described in the following …☆11Updated 4 years ago
- This is the repository which contains the code that was used to generate the results and figures of the “Single-cell RNA-sequencing revea…☆12Updated last year