Alternatives and similar repositories for AtlasEndometriosis

Users that are interested in AtlasEndometriosis are comparing it to the libraries listed below

• broadinstitute / mix_seq_ms
  Code associated with MIX-seq manuscript
  ☆15Updated 5 years ago
• AmandaKedaigle / OrganoidAtlas
  Code to go along with https://doi.org/10.1016/j.cell.2022.09.010
  ☆21Updated 3 years ago
• zhangyuqing / sva-devel
  ☆12Updated 5 years ago
• YosefLab / totalVI_reproducibility
  ☆16Updated 3 years ago
• klarman-cell-observatory / sc_eVIP
  Variant impact phenotyping using Perturb-seq
  ☆10Updated last year
• pmelsted / AM_2024
  Analaysis for the batch correction paper
  ☆12Updated 7 months ago
• MarioniLab / milo_analysis_2020
  Code to reproduce analysis of Milo manuscript
  ☆14Updated 3 years ago
• SydneyBioX / scClassify
  Hierarchical classification of cells
  ☆28Updated last year
• xzhoulab / DRComparison
  Comparison of dimensionality reduction methods
  ☆30Updated 5 years ago
• MarioniLab / SpatialMouseAtlas2020
  Data processing and analysis scripts for our spatial profiling of embryos using seqFISH
  ☆16Updated 2 years ago
• SpatialTranscriptomicsResearch / st_viewer
  A GUI tool for easy and smooth visualisation and analysis of Spatial Transcriptomics datasets
  ☆15Updated 4 years ago
• Sun-lab / ideas
  Individual level Differential Expression Analysis for Single cells
  ☆26Updated 2 years ago
• Pinlyu3 / CellAnn_shinyapp
  CellAnn
  ☆12Updated 2 years ago
• LieberInstitute / VistoSeg
  Image processing pipeline for spatial projects
  ☆17Updated 2 years ago
• biodev / beataml2_manuscript
  Workflow to reproduce results and figures for the second BeatAML manuscript
  ☆13Updated 3 years ago
• immunogenomics / amp_phase1_ra
  Zhang, et al, Nature Immunology, 2019. Use single-cell transcriptomics and proteomics to study autoimmune diseases.
  ☆20Updated 9 months ago
• quadbio / organoid_regulomes
  Reproducibility code for the manuscript: 'Inferring and perturbing cell fate regulomes in human cerebral organoids
  ☆30Updated 2 years ago
• Drinchai / BloodGen3Module
  This R package for performing module repertoire analyses and generating fingerprint representations
  ☆16Updated 4 years ago
• jingshuw / descend
  ☆19Updated 4 years ago
• andrewcharlesjones / cplvm
  Contrastive Poisson latent variable models (CPLVMs)
  ☆11Updated 3 years ago
• Katsevich-Lab / sceptre
  An R package for single-cell CRISPR screen data analysis emphasizing statistical rigor, massive scalability, and ease of use.
  ☆34Updated 3 months ago
• dpeerlab / seqc
  Single-Cell Sequencing Quality Control and Processing Software
  ☆16Updated 3 years ago
• Dingpw / Endothelial-Cell-Heterogeneity-and-Microglia-Regulons-Revealed-by-A-Pig-Cell-Landscape-at-Single-cel
  ☆15Updated 3 years ago
• khodosevichlab / CellAnnotatoR
  Automated marker-based annotation of cell types
  ☆13Updated 3 years ago
• RMolania / TCGA_PanCancer_UnwantedVariation
  ☆48Updated last year
• LieberInstitute / 10xPilot_snRNAseq-human
  10x snRNA-seq study on 5 postmortem human brain regions across the reward circuitry: NAc, AMY, sACC, DLPFC, and HPC
  ☆25Updated 3 years ago
• klarman-cell-observatory / Perturb-CITE-seq
  ☆15Updated 3 years ago
• powellgenomicslab / ascend
  Analysis of Single Cell Expression, Normalization and Differential expression
  ☆12Updated 5 years ago
• miccec / GBMstates
  Scripts from the GBM cellular states paper
  ☆20Updated 4 years ago
• Castelo-Branco-lab / scCut-Tag_2020
  Code required to reproduce analysis of the single cell Cut and Tag data in the resource paper (Bartosovic et. al., 2020)
  ☆13Updated 4 years ago