lamanno-epfl / tomographerLinks
The Tomographer package implements the mathematical spatial image reconstruction of any set of read counts as described in the following article: https://www.nature.com/articles/s41587-021-00879-7
☆11Updated 4 years ago
Alternatives and similar repositories for tomographer
Users that are interested in tomographer are comparing it to the libraries listed below
Sorting:
- ☆12Updated 4 years ago
- Analysis of Single Cell Expression, Normalization and Differential expression☆12Updated 5 years ago
- Code required to reproduce analysis of the single cell Cut and Tag data in the resource paper (Bartosovic et. al., 2020)☆13Updated 4 years ago
- Perturb-seq analysis package☆15Updated last year
- ☆15Updated 2 years ago
- ☆12Updated 2 years ago
- Image processing pipeline for spatial projects☆15Updated 2 years ago
- Analyzing chromatin accessibility data in R☆18Updated 2 years ago
- ANS_signature_scoring: A gene expression signature scoring Python package.☆16Updated last month
- ☆12Updated 4 years ago
- Dingpw / Endothelial-Cell-Heterogeneity-and-Microglia-Regulons-Revealed-by-A-Pig-Cell-Landscape-at-Single-cel☆15Updated 3 years ago
- ☆16Updated 2 years ago
- GESTALT processing pipeline for barcodes captured with single-cell RNA sequencing☆13Updated 5 years ago
- epigenome analysis to rank transcription factors☆13Updated 5 years ago
- Combined clonality and transcriptome scRNAseq clustering method☆11Updated 2 years ago
- Vaeda method for computational doublet annotation☆17Updated last year
- TRUST4 manuscript evaluation☆15Updated 3 years ago
- ☆18Updated 4 years ago
- Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data☆22Updated last year
- This repository contains HCA Benchmarking codes☆26Updated 5 years ago
- R package for distinguishing cells from background barcodes in droplet-based single-cell RNA-seq data☆10Updated 2 years ago
- Blastocyst-like structures generated from human pluripotent stem cells☆12Updated 3 years ago
- Automated marker-based annotation of cell types☆13Updated 3 years ago
- Spatial RNA velocity☆10Updated last year
- Data analysis pipeline for scNT-seq (single-cell metabolically labeled new RNA tagging sequencing)☆16Updated 2 years ago
- RNA velocity validation☆22Updated 3 years ago
- Regulatory networks with Direct Information☆17Updated 6 years ago
- scover☆24Updated last year
- Code associated with MIX-seq manuscript☆15Updated 5 years ago
- ☆14Updated 6 years ago