lamanno-epfl / tomographerLinks
The Tomographer package implements the mathematical spatial image reconstruction of any set of read counts as described in the following article: https://www.nature.com/articles/s41587-021-00879-7
☆11Updated 4 years ago
Alternatives and similar repositories for tomographer
Users that are interested in tomographer are comparing it to the libraries listed below
Sorting:
- ☆12Updated 4 years ago
- Regulatory networks with Direct Information☆16Updated 5 years ago
- Analysis of Single Cell Expression, Normalization and Differential expression☆12Updated 5 years ago
- ☆16Updated last year
- Automated marker-based annotation of cell types☆13Updated 2 years ago
- ☆13Updated last year
- Perturb-seq analysis package☆14Updated last year
- epigenome analysis to rank transcription factors☆13Updated 5 years ago
- Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas☆25Updated last year
- Overview of the scripts used to analyse the brainimmuneatlas data☆19Updated 4 years ago
- Code associated with MIX-seq manuscript☆15Updated 4 years ago
- Landscape Single Cell Entropy☆20Updated 4 years ago
- Image processing pipeline for spatial projects☆15Updated last year
- Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data☆21Updated last year
- scID☆13Updated 3 years ago
- RNA velocity validation☆22Updated 3 years ago
- ☆16Updated 3 years ago
- Spatial RNA velocity☆10Updated 8 months ago
- Algorithms for single-cell analysis☆29Updated 3 years ago
- Individual level Differential Expression Analysis for Single cells☆24Updated 2 years ago
- This repository contains HCA Benchmarking codes☆26Updated 5 years ago
- Vaeda method for computational doublet annotation☆16Updated 11 months ago
- ☆12Updated 4 years ago
- Efficiently compute robust markers across single-cell datasets☆11Updated 4 years ago
- ANS_signature_scoring: A gene expression signature scoring Python package.☆15Updated 2 months ago
- SuperCell for Cytometry data☆12Updated last year
- ☆28Updated 3 years ago
- ENHANCE: Accurate denoising of single-cell RNA-Seq data (Python implementation)☆14Updated 6 years ago
- single nuclei RNA-seq analysis toolbox☆10Updated 8 years ago
- Isoform-level expression patterns in single-cell RNA-sequencing data☆11Updated 2 years ago