vsbuffalo / genomapLinks
A Rust library for storing generic genomic data by sorted chromosome name
☆17Updated 11 months ago
Alternatives and similar repositories for genomap
Users that are interested in genomap are comparing it to the libraries listed below
Sorting:
- The python binding for D4 format☆16Updated 3 years ago
- Bam Read Index - Extract alignments from a bam file by readname☆27Updated last year
- ☆22Updated 8 months ago
- A minimap2 implementation with binseq inputs☆16Updated last month
- Hidden Markov Model based Copy number caller☆20Updated 10 months ago
- VEP-like tool for sequence ontology and HGVS annotation of VCF files☆21Updated last week
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆14Updated 2 weeks ago
- add true-negative SVs from a population callset to a truth-set.☆15Updated 3 years ago
- Rust wrapper for the next generation (still currently in C++)☆28Updated last month
- Tools to gather evidence for structural variation via breakpoint detection.☆19Updated 4 months ago
- Unfazed by genomic variant phasing☆27Updated last year
- process any file in tabular format. Fasta/fastq/GTF/GFF/VCF/SAM/BED☆21Updated last week
- gia: Genomic Interval Arithmetic☆65Updated last year
- ☆14Updated last year
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆33Updated 2 months ago
- Hierarchical binned indexed data store for on-disk genomic data.☆14Updated 7 months ago
- A bioinformatics tool written in Rust to find palindromic sequences in DNA☆35Updated 6 months ago
- A (very) fast program for getting statistics about a fastq file, the way I need them, written in Rust☆32Updated 7 months ago
- ☆13Updated 3 years ago
- Samwell: a python package for using genomic files... well☆20Updated 3 years ago
- syncmer graphs, and perhaps other sorts of sequence graphs☆21Updated 4 months ago
- Genome browser hub for the T2T genomes and resources☆23Updated 3 weeks ago
- convert reads from repeated measures of same piece of DNA into spaced matricies for deep learners.☆14Updated 2 years ago
- CLI to automate Nextflow pipeline testing☆12Updated last week
- Benchmark structural variant calls against a reference set☆17Updated 10 months ago
- Linear-time, low-memory construction of variation graphs☆20Updated 5 years ago
- A command line tool (in Kotlin/JVM) for intuitively visualizing BAM alignments. (Currently unmaintained)☆10Updated last year
- Summarize and filter read alignments from multiple sequencing samples (taken as sorted BAM files)☆17Updated last month
- Coronavirus (SARS-Cov-2) sequencing analysis☆10Updated 3 years ago
- convert CHAIN format to PAF format☆14Updated 8 months ago