A Rust library for storing generic genomic data by sorted chromosome name
☆17Sep 26, 2024Updated last year
Alternatives and similar repositories for genomap
Users that are interested in genomap are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- The python binding for D4 format☆16Oct 22, 2021Updated 4 years ago
- bedtools-like functionality for interval sets in rust☆55Aug 5, 2025Updated 8 months ago
- A minimal copy fastq and fasta reader built for parallel support and paired end processing☆42Mar 24, 2026Updated 3 weeks ago
- Reference implementations of minimizer schemes to go with the mod-minimizers paper.☆29Apr 24, 2025Updated 11 months ago
- Rust library for processing sequencing reads.☆25Sep 2, 2024Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- A Rust library and command line tool for working with genomic ranges and their data.☆100May 29, 2024Updated last year
- This tools counts the number of specific k-mers within sequence data. The counts can then be compare to other counts to determine to comp…☆31Nov 25, 2024Updated last year
- ☆21Dec 26, 2025Updated 3 months ago
- Tools to gather evidence for structural variation via breakpoint detection.☆20Mar 27, 2026Updated 2 weeks ago
- Generate random test data for bioinformatics☆27Jun 17, 2024Updated last year
- k-mers and the like☆22Apr 6, 2026Updated last week
- A filter algorithm with program to filter an alignment or mapping file☆12May 15, 2025Updated 10 months ago
- Optimal distance lower bound k-mer sampling.☆12Jun 19, 2024Updated last year
- Tandem repeat genotyping with long reads☆36Sep 23, 2025Updated 6 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆15Aug 10, 2025Updated 8 months ago
- simple bioinformatics command-line (t)ools (i) (w)ished (i) (h)ad.☆44Mar 29, 2023Updated 3 years ago
- De novo tandem repeat calling from PacBio HiFi data☆19Dec 5, 2025Updated 4 months ago
- A Rust library providing fully dynamic sets of k-mers with high locality☆47Feb 12, 2026Updated 2 months ago
- ntHash implementation in Rust☆36Jul 12, 2024Updated last year
- bioinformatics toolkit in rust☆103Feb 15, 2026Updated last month
- convert reads from repeated measures of same piece of DNA into spaced matricies for deep learners.☆14Apr 21, 2023Updated 2 years ago
- A bioinformatics tool for viewing and calculating base modification frequencies from BAM files☆44Mar 31, 2026Updated 2 weeks ago
- ☆13Apr 18, 2022Updated 3 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆17Mar 17, 2023Updated 3 years ago
- Fast and Memory Efficient Genome Sketching via HyperLogLog, HyperMinHash and UltraLogLog☆20Jan 22, 2026Updated 2 months ago
- an API for intersections of genomic data☆149Mar 12, 2026Updated last month
- Catalogue of pairwise alignment algorithms and benchmarks☆25Jan 6, 2026Updated 3 months ago
- A very fast interval tree data structure☆131Feb 3, 2025Updated last year
- gia: Genomic Interval Arithmetic☆66Aug 21, 2024Updated last year
- Concurrency algorithms☆13Apr 7, 2025Updated last year
- ziglang + htslib☆21Oct 31, 2021Updated 4 years ago
- expressions on VCFs☆91Mar 17, 2026Updated 3 weeks ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Genome-wide TR catalog and variation clusters described in [Weisburd, Dolzhenko, et al. 2024]☆17Mar 26, 2026Updated 2 weeks ago
- ProSolo, variant calling from single cell DNA-seq data, or: bulk backing vocals for single cell solos.☆21Sep 1, 2021Updated 4 years ago
- ☆19Feb 15, 2025Updated last year
- A minimap2 implementation with binseq inputs☆17Dec 11, 2025Updated 4 months ago
- The D4 Quantitative Data Format☆172Nov 28, 2025Updated 4 months ago
- Location of public benchmarking; primarily final results☆18Feb 17, 2025Updated last year
- Hierarchical binned indexed data store for on-disk genomic data.☆13Jan 18, 2025Updated last year