A Rust library for storing generic genomic data by sorted chromosome name
☆18Sep 26, 2024Updated 2 years ago
Alternatives and similar repositories for genomap
Users that are interested in genomap are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- How many distinct k-mers are there in a sequence?☆11Oct 26, 2026Updated last week
- ☆15Updated this week
- A minimal copy fastq and fasta reader built for parallel support and paired end processing☆51Oct 22, 2026Updated last week
- Tools to gather evidence for structural variation via breakpoint detection.☆20Mar 27, 2026Updated 7 months ago
- BAM/SAM/CRAM/FASTA reader, pileup engine, BCF/BAM writing☆31Updated this week
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- This tools counts the number of specific k-mers within sequence data. The counts can then be compare to other counts to determine to comp…☆32Nov 25, 2024Updated last year
- Svirlpool: structural variant detection from long read sequencing by local assembly☆10Oct 11, 2026Updated 3 weeks ago
- Rust library for processing sequencing reads.☆25Sep 2, 2024Updated 2 years ago
- bedtools-like functionality for interval sets in rust☆56Aug 5, 2025Updated last year
- Optimal distance lower bound k-mer sampling.☆12Jun 19, 2024Updated 2 years ago
- The python binding for D4 format☆16Oct 22, 2021Updated 5 years ago
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆15Aug 10, 2025Updated last year
- Reference implementations of minimizer schemes to go with the mod-minimizers paper.☆29Jul 12, 2026Updated 3 months ago
- A minimap2 implementation with binseq inputs☆18Dec 11, 2025Updated 10 months ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- a rust library for high throughput binary encoding of genomic sequences☆12Updated this week
- Run a command and report its process tree's CPU, memory, and I/O usage☆21Updated this week
- A Rust library and command line tool for working with genomic ranges and their data.☆103May 29, 2024Updated 2 years ago
- KaryoScope: rapid, alignment-free sequence annotation for the pangenome era☆29Oct 21, 2026Updated last week
- ☆12Apr 18, 2022Updated 4 years ago
- Exact, SIMD-accelerated sequence alignment (Smith-Waterman, Needleman-Wunsch, semi-global, overlap)☆12Aug 10, 2026Updated 2 months ago
- ☆10Jan 20, 2026Updated 9 months ago
- Command line tools for IntSpan related bioinformatics operations☆12Apr 9, 2025Updated last year
- Concurrency algorithms☆13Apr 7, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Generate random test data for bioinformatics☆27Jun 17, 2024Updated 2 years ago
- Fast long-read RNA-seq mapping to a transcriptome with locally consistent parsing☆22Updated this week
- dv-trio provides a pipeline to call variants for a trio (father-mother-child) using DeepVariants [1]. Genomic Variant Calling Files (gVCF…☆11Feb 3, 2021Updated 5 years ago
- k-mers and the like☆22Oct 18, 2026Updated 2 weeks ago
- simple bioinformatics command-line (t)ools (i) (w)ished (i) (h)ad.☆44Mar 29, 2023Updated 3 years ago
- rust tool to choose the best read alignment between haploids to a diploid reference genome☆21Oct 20, 2026Updated last week
- expressions on VCFs☆94Sep 25, 2026Updated last month
- ☆21Dec 26, 2025Updated 10 months ago
- A rust-native port of wfa2lib☆15Aug 1, 2026Updated 3 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆49Apr 20, 2026Updated 6 months ago
- Fast and Memory Efficient Genome Sketching via HyperLogLog, HyperMinHash, UltraLogLog and ExaLogLog☆23Updated this week
- Fast SAM/BAM sorter.☆10Updated this week
- Spiritual successor to picard for sequencing qc☆65Oct 22, 2026Updated last week
- A decoder that automatically detects compression format (gzip, bzip2, xz, zstd) via external crates. Includes encoder as well.☆13Jan 8, 2026Updated 9 months ago
- Sniphles is a read-based phasing approach for phased variant calling of structural variants.☆12Oct 14, 2020Updated 6 years ago
- ☆12Oct 25, 2026Updated last week