vsbuffalo / genomap
A Rust library for storing generic genomic data by sorted chromosome name
☆17Updated 5 months ago
Alternatives and similar repositories for genomap:
Users that are interested in genomap are comparing it to the libraries listed below
- The python binding for D4 format☆16Updated 3 years ago
- add true-negative SVs from a population callset to a truth-set.☆15Updated 2 years ago
- ☆22Updated 3 months ago
- VEP-like tool for sequence ontology and HGVS annotation of VCF files☆17Updated this week
- A bioinformatics tool written in Rust to find palindromic sequences in DNA☆34Updated last month
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆14Updated 5 months ago
- Tools to gather evidence for structural variation via breakpoint detection.☆19Updated last month
- process any file in tabular format. Fasta/fastq/GTF/GFF/VCF/SAM/BED☆22Updated last month
- Genome browser hub for the T2T genomes and resources☆17Updated 3 weeks ago
- Hierarchical binned indexed data store for on-disk genomic data.☆14Updated last month
- Coronavirus (SARS-Cov-2) sequencing analysis☆10Updated 3 years ago
- Hidden Markov Model based Copy number caller☆20Updated 4 months ago
- A command line tool (in Kotlin/JVM) for intuitively visualizing BAM alignments. (Currently unmaintained)☆10Updated last year
- Kmer Analysis of Pileups for Genotyping☆21Updated last month
- Teaching modules for Human Genome Variation Lab.☆20Updated 7 months ago
- ☆9Updated 2 years ago
- Variant call adjudication☆16Updated 9 months ago
- Wrapper over rust-htslib for building collections of BAM records for testing.☆11Updated last year
- ☆12Updated 3 years ago
- Benchmark structural variant calls against a reference set☆17Updated 4 months ago
- Unfazed by genomic variant phasing☆26Updated 9 months ago
- convert reads from repeated measures of same piece of DNA into spaced matricies for deep learners.☆14Updated last year
- Functions to compare a SV call sets against a truth set.☆29Updated 10 months ago
- Generate random test data for bioinformatics☆25Updated 8 months ago
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆28Updated 3 months ago
- Samwell: a python package for using genomic files... well☆20Updated 2 years ago
- A simple tool to fix PacBio fasta/q that was not properly split into subreads☆14Updated 3 years ago
- Split a BAM file by haplotype support☆16Updated 7 years ago
- MEMO: MEM-based pangenome indexing for k-mer queries☆18Updated 9 months ago
- drunk on perbase pileups and lua expressions☆17Updated last year