vsbuffalo / genomapLinks
A Rust library for storing generic genomic data by sorted chromosome name
☆17Updated last year
Alternatives and similar repositories for genomap
Users that are interested in genomap are comparing it to the libraries listed below
Sorting:
- ☆21Updated last month
- A minimap2 implementation with binseq inputs☆17Updated 2 months ago
- VEP-like tool for sequence ontology and HGVS annotation of VCF files☆24Updated last week
- The python binding for D4 format☆16Updated 4 years ago
- A command line tool (in Kotlin/JVM) for intuitively visualizing BAM alignments. (Currently unmaintained)☆11Updated 2 years ago
- Tools to gather evidence for structural variation via breakpoint detection.☆19Updated 2 weeks ago
- Bam Read Index - Extract alignments from a bam file by readname☆28Updated last year
- Hidden Markov Model based Copy number caller☆20Updated 2 months ago
- A (very) fast program for getting statistics about a fastq file, the way I need them, written in Rust☆32Updated 2 months ago
- Hierarchical binned indexed data store for on-disk genomic data.☆13Updated last year
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆34Updated 8 months ago
- Unfazed by genomic variant phasing☆27Updated last year
- add true-negative SVs from a population callset to a truth-set.☆15Updated 3 years ago
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆15Updated 6 months ago
- gia: Genomic Interval Arithmetic☆66Updated last year
- ☆14Updated 2 years ago
- Coronavirus (SARS-Cov-2) sequencing analysis☆10Updated 4 years ago
- Variant call adjudication☆16Updated last year
- A bioinformatics tool written in Rust to find palindromic sequences in DNA☆38Updated 5 months ago
- drunk on perbase pileups and lua expressions☆19Updated 2 months ago
- Teaching modules for Human Genome Variation Lab.☆20Updated 8 months ago
- Linear-time, low-memory construction of variation graphs☆20Updated 6 years ago
- process any file in tabular format. Fasta/fastq/GTF/GFF/VCF/SAM/BED☆21Updated 5 months ago
- CLI to automate Nextflow pipeline testing☆12Updated last month
- convert reads from repeated measures of same piece of DNA into spaced matricies for deep learners.☆14Updated 2 years ago
- Pipeline to produce consensus reads using unique molecular indexes/barcodes (UMIs)☆26Updated 2 months ago
- Summarize and filter read alignments from multiple sequencing samples (taken as sorted BAM files)☆18Updated 3 months ago
- Location of public benchmarking; primarily final results☆18Updated 11 months ago
- convert CHAIN format to PAF format☆15Updated last year
- Wrapper over rust-htslib for building collections of BAM records for testing.☆10Updated 2 months ago