vsbuffalo / genomapLinks
A Rust library for storing generic genomic data by sorted chromosome name
☆17Updated 8 months ago
Alternatives and similar repositories for genomap
Users that are interested in genomap are comparing it to the libraries listed below
Sorting:
- ☆22Updated 6 months ago
- VEP-like tool for sequence ontology and HGVS annotation of VCF files☆20Updated this week
- A minimap2 implementation with binseq inputs☆14Updated last month
- The python binding for D4 format☆16Updated 3 years ago
- add true-negative SVs from a population callset to a truth-set.☆15Updated 2 years ago
- Rust wrapper for the next generation (still currently in C++)☆25Updated this week
- Tools to gather evidence for structural variation via breakpoint detection.☆19Updated last month
- Hierarchical binned indexed data store for on-disk genomic data.☆14Updated 4 months ago
- process any file in tabular format. Fasta/fastq/GTF/GFF/VCF/SAM/BED☆22Updated 3 months ago
- Hidden Markov Model based Copy number caller☆20Updated 7 months ago
- convert reads from repeated measures of same piece of DNA into spaced matricies for deep learners.☆14Updated 2 years ago
- ☆9Updated 3 years ago
- syncmer graphs, and perhaps other sorts of sequence graphs☆20Updated 2 months ago
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆33Updated this week
- ProSolo, variant calling from single cell DNA-seq data, or: bulk backing vocals for single cell solos.☆22Updated 3 years ago
- A bioinformatics tool written in Rust to find palindromic sequences in DNA☆35Updated 4 months ago
- drunk on perbase pileups and lua expressions☆18Updated 3 weeks ago
- A command line tool (in Kotlin/JVM) for intuitively visualizing BAM alignments. (Currently unmaintained)☆10Updated last year
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆14Updated 8 months ago
- Variant call adjudication☆16Updated 11 months ago
- convert CHAIN format to PAF format☆14Updated 5 months ago
- Coronavirus (SARS-Cov-2) sequencing analysis☆10Updated 3 years ago
- Samwell: a python package for using genomic files... well☆20Updated 2 years ago
- Genome browser hub for the T2T genomes and resources☆21Updated last month
- ☆14Updated last year
- Split a BAM file by haplotype support☆16Updated 7 years ago
- ☆12Updated 3 years ago
- Dividing heterogeneous long-read sequencing into groups with de Bruijn graphs☆24Updated 6 months ago
- Summarize and filter read alignments from multiple sequencing samples (taken as sorted BAM files)☆17Updated 2 months ago
- Wrapper over rust-htslib for building collections of BAM records for testing.☆11Updated last year