Alternatives and similar repositories for haslr

Users that are interested in haslr are comparing it to the libraries listed below

• DecodeGenetics / Ratatosk
  Hybrid error correction of long reads using colored de Bruijn graphs
  ☆104Updated 2 weeks ago
• dwinter / pafr
  Read, manipulate and visualize 'Pairwise mApping Format' data in R
  ☆73Updated 4 years ago
• PacificBiosciences / jasmine
  Call select base modifications in PacBio HiFi reads
  ☆14Updated 7 months ago
• KolmogorovLab / hapdup
  Pipeline to convert a haploid assembly into diploid
  ☆103Updated 7 months ago
• katerinakazantseva / strainy
  Graph-based assembly phasing
  ☆87Updated 4 months ago
• rrwick / August-2019-consensus-accuracy-update
  A short analysis of Oxford Nanopore consensus accuracy for bacterial genome assemblies
  ☆60Updated 6 years ago
• rrwick / Minipolish
  A tool for Racon polishing of miniasm assemblies
  ☆77Updated 2 weeks ago
• JustinChu / JupiterPlot
  A Circos-based tool to visualize genome assembly consistency or synteny between assemblies.
  ☆85Updated 9 months ago
• sanger-pathogens / assembly_improvement
  Improve the quality of a denovo assembly by scaffolding and gap filling
  ☆56Updated 4 years ago
• Gaius-Augustus / TSEBRA
  TSEBRA: Transcript Selector for BRAKER
  ☆48Updated 10 months ago
• kensung-lab / hypo
  HyPo: Super Fast & Accurate Polisher for Long Read Genome Assemblies
  ☆64Updated 5 years ago
• kjenike / panagram
  ☆66Updated 2 weeks ago
• ythuang0522 / homopolish
  High-quality Nanopore-only genome polisher
  ☆69Updated last year
• AntonBankevich / LJA
  ☆117Updated this week
• bcgsc / ntEdit
  ✏️ Genome assembly polishing & SNV detection
  ☆70Updated 2 months ago
• rhysf / Synima
  Synteny Imager
  ☆64Updated last month
• nanoporetech / duplex-tools
  Splitting of sequence reads by internal adapter sequence search
  ☆51Updated 2 years ago
• arangrhie / merfin
  Evaluate variant calls and its combination with k-mer multiplicity
  ☆67Updated 2 years ago
• bcgsc / ntJoin
  🔗Genome assembly scaffolder using minimizer graphs
  ☆84Updated 11 months ago
• bonsai-team / Porechop_ABI
  Adapter trimmer for Oxford Nanopore reads using ab initio method
  ☆51Updated 9 months ago
• holtjma / fmlrc
  a long-read error correction tool using the multi-string Burrows Wheeler Transform
  ☆45Updated 5 years ago
• jts / assembly_accuracy
  tools for assessing the accuracy of genome assemblies
  ☆34Updated last year
• bcgsc / LongStitch
  🪡Correct and scaffold assemblies using long reads
  ☆55Updated 2 weeks ago
• vgl-hub / gfastats
  A single fast and exhaustive tool for summary statistics and simultaneous *fa* (fasta, fastq, gfa [.gz]) genome assembly file manipulatio…
  ☆112Updated 3 months ago
• bhattlab / lathe
  A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing
  ☆69Updated 4 years ago
• KamilSJaron / k-mer-approaches-for-biodiversity-genomics
  k-mer learning materials
  ☆74Updated 7 months ago
• uio-cels / NucDiff
  In-depth characterization and annotation of differences between two sets of DNA sequences
  ☆62Updated 5 years ago
• gatech-genemark / ProtHint
  Protein hint generation pipeline for gene finding in eukaryotic genomes
  ☆60Updated last year
• vikshiv / mumemto
  Mumemto: multi-MUM and MEM finding across pangenomes
  ☆111Updated 2 months ago
• yangao07 / longcallD
  A local-haplotagging-based small and structural variant caller
  ☆80Updated 3 weeks ago