Alternatives and similar repositories for haslr

Users that are interested in haslr are comparing it to the libraries listed below

• KamilSJaron / k-mer-approaches-for-biodiversity-genomics
  k-mer learning materials
  ☆80Updated 7 months ago
• KolmogorovLab / hapdup
  Pipeline to convert a haploid assembly into diploid
  ☆103Updated 8 months ago
• kjenike / panagram
  ☆66Updated last month
• dwinter / pafr
  Read, manipulate and visualize 'Pairwise mApping Format' data in R
  ☆74Updated 4 years ago
• DecodeGenetics / Ratatosk
  Hybrid error correction of long reads using colored de Bruijn graphs
  ☆104Updated last month
• bcgsc / LongStitch
  🪡Correct and scaffold assemblies using long reads
  ☆55Updated last month
• bcgsc / ntJoin
  🔗Genome assembly scaffolder using minimizer graphs
  ☆84Updated last year
• rrwick / August-2019-consensus-accuracy-update
  A short analysis of Oxford Nanopore consensus accuracy for bacterial genome assemblies
  ☆60Updated 6 years ago
• yangao07 / longcallD
  A local-haplotagging-based small and structural variant caller
  ☆85Updated this week
• sanger-pathogens / assembly_improvement
  Improve the quality of a denovo assembly by scaffolding and gap filling
  ☆56Updated 4 years ago
• nanoporetech / duplex-tools
  Splitting of sequence reads by internal adapter sequence search
  ☆51Updated 2 years ago
• kensung-lab / hypo
  HyPo: Super Fast & Accurate Polisher for Long Read Genome Assemblies
  ☆64Updated 5 years ago
• rrwick / Minipolish
  A tool for Racon polishing of miniasm assemblies
  ☆77Updated last month
• lh3 / unimap
  A EXPERIMENTAL fork of minimap2 optimized for assembly-to-reference alignment
  ☆87Updated 4 years ago
• bcgsc / ntSynt
  Detecting multi-genome synteny using minimizer graph mapping
  ☆82Updated last month
• PacificBiosciences / jasmine
  Call select base modifications in PacBio HiFi reads
  ☆13Updated 8 months ago
• Gaius-Augustus / TSEBRA
  TSEBRA: Transcript Selector for BRAKER
  ☆48Updated 10 months ago
• genomeannotation / GAG
  Generates an NCBI .tbl file of annotations on a genome.
  ☆68Updated 7 years ago
• josephryan / estimate_genome_size.pl
  Scripts to estimate genome size and coverage from kmer distribution generated by jellyfish
  ☆57Updated 2 years ago
• clemgoub / dnaPipeTE
  dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…
  ☆58Updated 2 years ago
• kishwarshafin / helen
  H.E.L.E.N. (Homopolymer Encoded Long-read Error-corrector for Nanopore)
  ☆72Updated 4 years ago
• arangrhie / merfin
  Evaluate variant calls and its combination with k-mer multiplicity
  ☆67Updated 2 years ago
• yeeus / GCI
  A program for assessing the T2T genome continuity
  ☆87Updated 3 weeks ago
• HuffordLab / GenomeQC
  ☆33Updated 4 years ago
• rhysf / Synima
  Synteny Imager
  ☆64Updated 2 months ago
• SAMtoBAM / MUMandCo
  MUM&Co is a simple bash script that uses Whole Genome Alignment information provided by MUMmer (only v4) to detect Structural Variation
  ☆73Updated last month
• katerinakazantseva / strainy
  Graph-based assembly phasing
  ☆87Updated 5 months ago
• harta55 / EnTAP
  EnTAP is moving to GitLab for future changes https://gitlab.com/PlantGenomicsLab/EnTAP
  ☆41Updated 8 months ago
• AntonBankevich / LJA
  ☆117Updated 3 weeks ago
• bonsai-team / Porechop_ABI
  Adapter trimmer for Oxford Nanopore reads using ab initio method
  ☆52Updated 10 months ago