vpc-ccg / haslr
A fast tool for hybrid genome assembly of long and short reads
☆76Updated 4 years ago
Related projects ⓘ
Alternatives and complementary repositories for haslr
- Structural Variant Identification Method using Genome Assemblies☆93Updated 2 years ago
- 🔗Genome assembly scaffolder using minimizer graphs☆82Updated last month
- Evaluate variant calls and its combination with k-mer multiplicity☆63Updated last year
- Pipeline to convert a haploid assembly into diploid☆90Updated 5 months ago
- Hybrid error correction of long reads using colored de Bruijn graphs☆95Updated last month
- HyPo: Super Fast & Accurate Polisher for Long Read Genome Assemblies☆59Updated 4 years ago
- Remove CCS reads with remnant PacBio adapter sequences and convert outputs to a compressed .fastq (.fastq.gz).☆81Updated 3 months ago
- A single fast and exhaustive tool for summary statistics and simultaneous *fa* (fasta, fastq, gfa [.gz]) genome assembly file manipulatio…☆91Updated this week
- Protein hint generation pipeline for gene finding in eukaryotic genomes☆56Updated last year
- A genomic k-mer counter (and sequence utility) with nice features.☆115Updated this week
- Repeat-aware polishing genomes assembled using HiFi long reads☆68Updated last month
- Mapping pipeline for data generated using Arima-HiC☆71Updated 5 months ago
- A tool for Racon polishing of miniasm assemblies☆73Updated 3 years ago
- PacBio hybrid error correction through iterative short read consensus☆60Updated 5 years ago
- PacBio BAM toolkit☆38Updated last week
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆69Updated 3 years ago
- ✏️ Genome assembly polishing & SNV detection☆64Updated this week
- Correct and scaffold assemblies using long reads☆46Updated last year
- A snakemake-based pipeline for assembling and polishing long genomes from long nanopore reads☆69Updated 3 years ago
- Annotation helper tool for the manual curation of transposable element consensus sequences☆44Updated 5 months ago
- Scalable long read self-correction and assembly polishing with multiple sequence alignment☆55Updated 9 months ago
- Read, manipulate and visualize 'Pairwise mApping Format' data in R☆67Updated 3 years ago
- Detecting multi-genome synteny using minimizer graph mapping☆70Updated last week
- Application of pan-genome for population☆95Updated 3 weeks ago
- PGR-TK: Pangenome Research Tool Kit☆93Updated 6 months ago
- Long read aligner☆112Updated last year
- vcfdist: Accurately benchmarking phased variant calls☆76Updated last week
- Error correction for Illumina RNA-seq reads☆63Updated 8 months ago
- A EXPERIMENTAL fork of minimap2 optimized for assembly-to-reference alignment☆87Updated 3 years ago
- Tandem repeat expansion detection or genotyping from long-read alignments☆67Updated last month