☆20Dec 13, 2023Updated 2 years ago
Alternatives and similar repositories for alvis
Users that are interested in alvis are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A nextflow pipeline for polishing CLR assemblies☆18Feb 3, 2023Updated 3 years ago
- A fast tool for hybrid genome assembly of long and short reads☆78Apr 22, 2020Updated 6 years ago
- Grabbing genome accessions & download info based on taxonomy, using the NCBI REST API, w00t☆12Feb 23, 2025Updated last year
- MEM mapper prototype☆13Nov 28, 2020Updated 5 years ago
- Adaptive haplotype assembly for efficiently leveraging high coverage in long reads☆13Sep 4, 2018Updated 7 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Generating UTRs from SHort Reads☆11Sep 28, 2020Updated 5 years ago
- ULTRA Locates Tandemly Repetitive Areas☆40Oct 23, 2025Updated 7 months ago
- base-accurate DNA sequence alignments using edlib and mashmap2☆32Feb 15, 2021Updated 5 years ago
- ☆26Aug 10, 2021Updated 4 years ago
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆49Feb 23, 2021Updated 5 years ago
- A fast and efficient short read mapper☆13Nov 7, 2021Updated 4 years ago
- extract MSAs from genome variation graphs☆34Mar 24, 2026Updated 2 months ago
- a toolkit for evaluation of the lenght of k-mer in a given genome dataset for alignment-free phylogenimic analysis.☆15Nov 21, 2024Updated last year
- An accurate and ultra-fast hybrid genome assembler☆88Apr 10, 2024Updated 2 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- In-depth characterization and annotation of differences between two sets of DNA sequences☆64May 18, 2020Updated 6 years ago
- ⛓ Correct misassemblies using linked AND long reads☆63Mar 24, 2026Updated 2 months ago
- The SYNY pipeline investigates synteny between species by reconstructing protein clusters from gene pairs.☆51Feb 8, 2026Updated 3 months ago
- This is the official site for JASPER (Jellyfish based Assembly Sequence Polisher for Error Reduction)☆12Jun 27, 2024Updated last year
- TSEBRA: Transcript Selector for BRAKER☆49Apr 7, 2026Updated last month
- Visualisation and prioritisation of genomic variants from human exome sequencing projects☆13Apr 23, 2019Updated 7 years ago
- De novo genome assembler.☆12Jul 30, 2018Updated 7 years ago
- Olivar: towards automated variant aware primer design for multiplex tiled amplicon sequencing of pathogens☆40Apr 6, 2026Updated last month
- 🪡Correct and scaffold assemblies using long reads☆57Apr 1, 2026Updated last month
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Assembler for raw de novo genome assembly of long uncorrected reads.☆35Dec 11, 2019Updated 6 years ago
- Assembly by Reduced Complexity (ARC)☆41Mar 29, 2016Updated 10 years ago
- Linear-time de novo Long Read Assembler☆41Mar 19, 2026Updated 2 months ago
- Colinear block visualisation tool☆31Jan 17, 2024Updated 2 years ago
- JTK -- a regional diploid genome assembler☆26Apr 22, 2026Updated last month
- A fast whole-genome aligner based on de Bruijn graphs☆160Jul 6, 2025Updated 10 months ago
- Read, manipulate and visualize 'Pairwise mApping Format' data in R☆81Apr 30, 2021Updated 5 years ago
- Panache is a web-based interface designed for the visualization of linearized pangenomes. It can be used to show presence/absence informa…☆48Jun 7, 2023Updated 2 years ago
- ☆18Mar 20, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Reorients assembled microbial sequences☆137Aug 21, 2025Updated 9 months ago
- Unzip assembly graphs with Hi-C data and/or long reads.☆28May 7, 2026Updated 2 weeks ago
- Validate and edit small eukaryotic genome assemblies☆32Apr 28, 2023Updated 3 years ago
- De novo assembly from Oxford Nanopore reads.☆89Feb 16, 2026Updated 3 months ago
- 🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies☆123May 4, 2026Updated 3 weeks ago
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆47Oct 3, 2023Updated 2 years ago
- Toolkit for VNTR genotyping and repeat-pan genome graph construction☆33Aug 18, 2025Updated 9 months ago