Alternatives and similar repositories for alvis

Users that are interested in alvis are comparing it to the libraries listed below

• compbiol / CAMSA
  CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies
  ☆24Updated 5 years ago
• mikolmogorov / maf2synteny
  A tool for recovering synteny blocks from multiple alignment
  ☆32Updated 4 years ago
• at-cg / mm2-plus
  Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)
  ☆35Updated last week
• kehrlab / PopIns2
  Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs
  ☆26Updated last year
• uio-bmi / NucBreak
  Location of structural errors in a genome assembly and structural variations between a pair of genomes
  ☆11Updated 6 years ago
• alguoo314 / JASPER
  This is the official site for JASPER (Jellyfish based Assembly Sequence Polisher for Error Reduction)
  ☆12Updated last year
• aesheppard / TETyper
  transposable element typing pipeline
  ☆19Updated last year
• mahulchak / mscaffolder
  A comparative genome scaffolding tool
  ☆16Updated 7 years ago
• PacificBiosciences / pbipa
  Improved Phased Assembler
  ☆28Updated 3 years ago
• atifrahman / SWALO
  Scaffolding with assembly likelihood optimization
  ☆21Updated 4 years ago
• TravisWheelerLab / BATH
  Better Alignments with Translated HMMER
  ☆23Updated 2 weeks ago
• institut-de-genomique / HAPO-G
  Hapo-G is a tool that aims to improve the quality of genome assemblies by polishing the consensus with accurate reads.
  ☆25Updated last month
• gf777 / mitoVGP
  The Vertebrate Genomes Project Mitogenome Assembly Pipeline
  ☆19Updated 2 years ago
• DRL / kinfin
  Taxon-aware analysis of clustered protein sequences
  ☆31Updated last year
• WHops / NAHRwhals
  R package and wrapper functions for identifying serial structural variations from genome assemblies
  ☆27Updated last year
• photocyte / plot_mitochondrial_genome_with_CIRCOS
  ☆16Updated 7 years ago
• RolandFaure / Hairsplitter
  Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.
  ☆35Updated 7 months ago
• kevsilva / StrainFLAIR
  Strain-level abundances estimation in metagenomic samples using variation graphs
  ☆24Updated 2 years ago
• at-cg / RAFT
  ☆28Updated last year
• ekg / edyeet
  base-accurate DNA sequence alignments using edlib and mashmap2
  ☆32Updated 4 years ago
• pierrepeterlongo / back_to_sequences
  ☆45Updated 2 weeks ago
• svm-zhang / AGOUTI
  Annotated Genome Optimization Using Transcriptome Information
  ☆20Updated 5 years ago
• yanboANU / Kmer2SNP
  ☆26Updated 4 years ago
• mcsimenc / PhyLTR
  Phylogenetic Analysis of Long Terminal Repeat Retrotransposons
  ☆18Updated 3 years ago
• fawaz-dabbaghieh / gfa_subgraphs
  Extracts subgraphs or components from a graph in GFA format
  ☆24Updated last year
• tlemane / kmdiff
  Differential k-mer analysis
  ☆38Updated last year
• esolares / HapSolo
  Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding
  ☆20Updated 9 months ago
• StephenHwang / MEMO
  MEMO: MEM-based pangenome indexing for k-mer queries
  ☆18Updated last year
• ekg / gimbricate
  recompute GFA link overlaps
  ☆25Updated 3 years ago
• DessimozLab / edgehog
  Infering ancestral synteny with hierarchical orthologous groups
  ☆36Updated last month