SR-Martin / alvis
☆19Updated last year
Alternatives and similar repositories for alvis:
Users that are interested in alvis are comparing it to the libraries listed below
- Scaffolding with assembly likelihood optimization☆21Updated 4 years ago
- The Vertebrate Genomes Project Mitogenome Assembly Pipeline☆18Updated 2 years ago
- This is the official site for JASPER (Jellyfish based Assembly Sequence Polisher for Error Reduction)☆12Updated 9 months ago
- Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding☆20Updated last month
- ☆15Updated 7 years ago
- A comparative genome scaffolding tool☆17Updated 6 years ago
- Haplotype-aware genome assembly toolkit☆29Updated 5 years ago
- A nextflow pipeline for polishing CLR assemblies☆17Updated 2 years ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 5 years ago
- Location of structural errors in a genome assembly and structural variations between a pair of genomes☆11Updated 5 years ago
- A reliable gap filling pipeline for draft genomes☆11Updated 5 years ago
- Simultaneous multi-sample transcript assembler for RNA-seq data☆17Updated 4 months ago
- Improvement of Long Read Assemblies (ILRA) is a pipeline to help in the post assembly process (finishing) by cleaning and merging contigs…☆13Updated 5 months ago
- Better Alignments with Translated HMMER☆18Updated this week
- Phylogenetic Analysis of Long Terminal Repeat Retrotransposons☆17Updated 2 years ago
- Strain-level abundances estimation in metagenomic samples using variation graphs☆25Updated 2 years ago
- convert a blast output to a bed file☆12Updated 9 years ago
- Consensus genome annotation using OMA☆23Updated 4 months ago
- Annotated Genome Optimization Using Transcriptome Information☆19Updated 4 years ago
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆30Updated 3 months ago
- ☆15Updated 4 years ago
- transposable element typing pipeline☆17Updated last year
- De novo VIral Genome Annotator☆21Updated 7 months ago
- Code to create a PRG from a Multiple Sequence Alignment file☆25Updated last year
- Improved Phased Assembler☆28Updated 3 years ago
- OMAmer - tree-driven and alignment-free protein assignment to sub-families☆18Updated last week
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆15Updated 6 years ago
- ☆16Updated last week
- Minimizer-based assembly scaffolding and mapping using long reads☆38Updated 6 months ago
- Scaffolding with Ultralong Reads☆15Updated 4 years ago