Alternatives and similar repositories for alvis

Users that are interested in alvis are comparing it to the libraries listed below

• PacificBiosciences / pbipa
  Improved Phased Assembler
  ☆28Updated 3 years ago
• uio-bmi / NucBreak
  Location of structural errors in a genome assembly and structural variations between a pair of genomes
  ☆11Updated 5 years ago
• compbiol / CAMSA
  CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies
  ☆24Updated 5 years ago
• gf777 / mitoVGP
  The Vertebrate Genomes Project Mitogenome Assembly Pipeline
  ☆19Updated 2 years ago
• mikolmogorov / maf2synteny
  A tool for recovering synteny blocks from multiple alignment
  ☆30Updated 3 years ago
• photocyte / plot_mitochondrial_genome_with_CIRCOS
  ☆15Updated 7 years ago
• at-cg / mm2-plus
  Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)
  ☆33Updated 2 months ago
• aesheppard / TETyper
  transposable element typing pipeline
  ☆19Updated last year
• bcgsc / ntLink
  Minimizer-based assembly scaffolding and mapping using long reads
  ☆43Updated 10 months ago
• tlemane / kmdiff
  Differential k-mer analysis
  ☆36Updated last year
• lh3 / gffio
  ☆32Updated 2 years ago
• atifrahman / SWALO
  Scaffolding with assembly likelihood optimization
  ☆22Updated 4 years ago
• alguoo314 / JASPER
  This is the official site for JASPER (Jellyfish based Assembly Sequence Polisher for Error Reduction)
  ☆12Updated last year
• fawaz-dabbaghieh / gfa_subgraphs
  Extracts subgraphs or components from a graph in GFA format
  ☆24Updated 9 months ago
• DessimozLab / OMAnnotator
  Consensus genome annotation using OMA
  ☆26Updated 2 months ago
• MartinPippel / DAmar
  Long read QC, assembly and scaffolding pipeline
  ☆13Updated 5 years ago
• karubiotools / getSequenceInfo
  Perl and Python scripts allowing to get sequence information from GenBank, RefSeq or ENA sequence repositories
  ☆14Updated 5 months ago
• institut-de-genomique / HAPO-G
  Hapo-G is a tool that aims to improve the quality of genome assemblies by polishing the consensus with accurate reads.
  ☆25Updated last year
• svm-zhang / AGOUTI
  Annotated Genome Optimization Using Transcriptome Information
  ☆20Updated 5 years ago
• RolandFaure / Hairsplitter
  Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.
  ☆35Updated 4 months ago
• kehrlab / PopIns2
  Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs
  ☆24Updated last year
• at-cg / RAFT
  ☆26Updated last year
• ERGA-consortium / pipelines
  ☆16Updated 2 months ago
• DRL / kinfin
  Taxon-aware analysis of clustered protein sequences
  ☆31Updated last year
• HaploConduct / HaploConduct
  Haplotype-aware genome assembly toolkit
  ☆29Updated 5 years ago
• ekg / gimbricate
  recompute GFA link overlaps
  ☆26Updated 2 years ago
• ThomasDOtto / ILRA
  Improvement of Long Read Assemblies (ILRA) is a pipeline to help in the post assembly process (finishing) by cleaning and merging contigs…
  ☆13Updated 9 months ago
• rnajena / poseidon
  PoSeiDon: positive selection detection and recombination analysis pipeline
  ☆38Updated last month
• DessimozLab / edgehog
  Infering ancestral synteny with hierarchical orthologous groups
  ☆24Updated 2 weeks ago
• yanboANU / Kmer2SNP
  ☆26Updated 4 years ago