⛓ Correct misassemblies using linked AND long reads
☆63Feb 4, 2026Updated 3 weeks ago
Alternatives and similar repositories for tigmint
Users that are interested in tigmint are comparing it to the libraries listed below
Sorting:
- long-read depth breaking☆11Apr 19, 2018Updated 7 years ago
- A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.☆207Nov 18, 2022Updated 3 years ago
- SALSA: A tool to scaffold long read assemblies with Hi-C data☆188May 17, 2024Updated last year
- 🌈Scaffold genome sequence assemblies using linked or long read sequencing data☆95Nov 6, 2024Updated last year
- 🪡Correct and scaffold assemblies using long reads☆57Sep 4, 2025Updated 6 months ago
- HiC-Hiker: A probabilistic model to determine contig orientation in chromosome-length scaffolds with Hi-C☆26Jan 14, 2021Updated 5 years ago
- A versatile pairwise aligner for genomic and spliced nucleotide sequences☆56Jun 4, 2024Updated last year
- Long read to reference genome mapping tool☆13Mar 14, 2024Updated last year
- Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads☆21Aug 2, 2022Updated 3 years ago
- Peregrine: Fast Genome Assembler Using SHIMMER Index☆102Feb 6, 2022Updated 4 years ago
- Evaluate variant calls and its combination with k-mer multiplicity☆67Dec 2, 2022Updated 3 years ago
- k-mer based assembly evaluation☆339Jun 28, 2024Updated last year
- Filter of Pairwise Alignement☆44Jan 31, 2022Updated 4 years ago
- profile the repeat landscape in a genome☆16Sep 9, 2014Updated 11 years ago
- T2Tools is a toolset contains several tools for T2T assembly, and it is under development.☆15Sep 17, 2025Updated 5 months ago
- finshingTool☆54Nov 22, 2016Updated 9 years ago
- ⛓ Long Interval Nucleotide K-mer Scaffolder☆73Apr 1, 2025Updated 11 months ago
- Better Alignments with Translated HMMER☆24Updated this week
- A Circos-based tool to visualize genome assembly consistency or synteny between assemblies.☆90Nov 23, 2024Updated last year
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆47Feb 23, 2021Updated 5 years ago
- k-mer Counter based on Multiple Burst Trees (multi-threaded)☆13Aug 31, 2016Updated 9 years ago
- HyPo: Super Fast & Accurate Polisher for Long Read Genome Assemblies☆65Feb 23, 2020Updated 6 years ago
- Unzip assembly graphs with Hi-C data and/or long reads.☆27Sep 20, 2024Updated last year
- A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats☆69May 22, 2021Updated 4 years ago
- Parallel implementation of OrthoMCL☆21Aug 26, 2022Updated 3 years ago
- ☆20Dec 13, 2023Updated 2 years ago
- Layout module for raw de novo genome assembly of long uncorrected reads.☆21Feb 2, 2021Updated 5 years ago
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads. http://genome.cshlp.org/content/early/2017/01/18/gr…☆296May 9, 2024Updated last year
- A fast tool for hybrid genome assembly of long and short reads☆78Apr 22, 2020Updated 5 years ago
- A filter algorithm with program to filter an alignment or mapping file☆12May 15, 2025Updated 9 months ago
- Chromosome-level scaffolding using multiple references☆165Sep 8, 2024Updated last year
- software tools for haplotype assembly from sequence data☆229Feb 9, 2025Updated last year
- Create a tree using Mash distances☆182Oct 24, 2023Updated 2 years ago
- Fast genome analysis from unassembled short reads☆313Apr 8, 2024Updated last year
- Validate and edit small eukaryotic genome assemblies☆32Apr 28, 2023Updated 2 years ago
- A fast approximate aligner for long DNA sequences☆287Oct 11, 2024Updated last year
- Tools for fast and flexible genome assembly scaffolding and improvement☆558Feb 14, 2024Updated 2 years ago
- Redundans is a pipeline that assists an assembly of heterozygous/polymorphic genomes.☆173Apr 14, 2025Updated 10 months ago
- [MOVED] Moved to paoloshasta/shasta. De novo assembly from Oxford Nanopore reads☆274Oct 13, 2022Updated 3 years ago