bcgsc / tigmintLinks
⛓ Correct misassemblies using linked AND long reads
☆60Updated last year
Alternatives and similar repositories for tigmint
Users that are interested in tigmint are comparing it to the libraries listed below
Sorting:
- Scalable long read self-correction and assembly polishing with multiple sequence alignment☆55Updated last year
- finshingTool☆54Updated 8 years ago
- Evaluate variant calls and its combination with k-mer multiplicity☆67Updated 2 years ago
- Show pangenome graphs in an easy way☆56Updated last week
- TGS scaffolding☆46Updated 3 years ago
- A local-haplotagging-based small and structural variant caller☆78Updated last week
- ☆63Updated 2 weeks ago
- TSEBRA: Transcript Selector for BRAKER☆47Updated 8 months ago
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago
- EnTAP is moving to GitLab for future changes https://gitlab.com/PlantGenomicsLab/EnTAP☆41Updated 6 months ago
- Call select base modifications in PacBio HiFi reads☆10Updated 6 months ago
- Large genome reassembly based on Hi-C data, continuation of GRAAL☆41Updated last year
- Scripts to estimate genome size and coverage from kmer distribution generated by jellyfish☆57Updated 2 years ago
- ☆77Updated 5 years ago
- Generates an NCBI .tbl file of annotations on a genome.☆68Updated 7 years ago
- ☆32Updated 4 years ago
- MUM&Co is a simple bash script that uses Whole Genome Alignment information provided by MUMmer (only v4) to detect Structural Variation☆71Updated 4 months ago
- k-mer learning materials☆73Updated 5 months ago
- Compute N50/NG50 and auN/auNG☆32Updated last year
- Read, manipulate and visualize 'Pairwise mApping Format' data in R☆74Updated 4 years ago
- Improve the quality of a denovo assembly by scaffolding and gap filling☆57Updated 4 years ago
- Hybrid error correction of long reads using colored de Bruijn graphs☆102Updated 10 months ago
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆58Updated 2 years ago
- 🪡Correct and scaffold assemblies using long reads☆56Updated last year
- ☆81Updated 5 months ago
- Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads☆22Updated 3 years ago
- Genome scaffolding based on HiC data in heterozygous and high ploidy genomes☆60Updated 7 months ago
- LRSDAY: Long-read Sequencing Data Analysis for Yeasts☆31Updated last year
- ☆44Updated 8 years ago
- A EXPERIMENTAL fork of minimap2 optimized for assembly-to-reference alignment☆88Updated 4 years ago