bcgsc / tigmintLinks
⛓ Correct misassemblies using linked AND long reads
☆63Updated 2 years ago
Alternatives and similar repositories for tigmint
Users that are interested in tigmint are comparing it to the libraries listed below
Sorting:
- ☆68Updated last week
- Scripts to estimate genome size and coverage from kmer distribution generated by jellyfish☆57Updated 3 years ago
- finshingTool☆54Updated 9 years ago
- Scalable long read self-correction and assembly polishing with multiple sequence alignment☆53Updated last year
- A EXPERIMENTAL fork of minimap2 optimized for assembly-to-reference alignment☆87Updated 4 years ago
- ☆45Updated 9 years ago
- A Circos-based tool to visualize genome assembly consistency or synteny between assemblies.☆90Updated last year
- Call select base modifications in PacBio HiFi reads☆15Updated 2 months ago
- Hybrid error correction of long reads using colored de Bruijn graphs☆107Updated 2 weeks ago
- Evaluate variant calls and its combination with k-mer multiplicity☆67Updated 3 years ago
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆59Updated 2 years ago
- TGS scaffolding☆47Updated 4 years ago
- MUM&Co uses Whole Genome Alignment information provided by MUMmer (only v4) to detect Structural Variation☆76Updated 2 weeks ago
- Read, manipulate and visualize 'Pairwise mApping Format' data in R☆77Updated 4 years ago
- 🪡Correct and scaffold assemblies using long reads☆57Updated 4 months ago
- TSEBRA: Transcript Selector for BRAKER☆49Updated 2 months ago
- HyPo: Super Fast & Accurate Polisher for Long Read Genome Assemblies☆65Updated 5 years ago
- LRSDAY: Long-read Sequencing Data Analysis for Yeasts☆34Updated last year
- An easy way to run BioNano genomic analysis☆28Updated 4 years ago
- Large genome reassembly based on Hi-C data, continuation of GRAAL☆43Updated last year
- Simple pileup-based variant caller☆95Updated 9 months ago
- ☆78Updated 5 years ago
- Splitting of sequence reads by internal adapter sequence search☆51Updated 2 years ago
- Protein hint generation pipeline for gene finding in eukaryotic genomes☆60Updated 2 years ago
- meta-pipeline for repetitive element de-fragmentation and annotation☆28Updated 5 years ago
- Generates an NCBI .tbl file of annotations on a genome.☆68Updated 7 years ago
- Improve the quality of a denovo assembly by scaffolding and gap filling☆57Updated 5 years ago
- 🔗Genome assembly scaffolder using minimizer graphs☆85Updated last year
- A local-haplotagging-based small and structural variant caller☆94Updated 2 weeks ago
- MarginPolish: Graph based assembly polishing☆47Updated 5 years ago