☆16Jan 5, 2018Updated 8 years ago
Alternatives and similar repositories for plot_mitochondrial_genome_with_CIRCOS
Users that are interested in plot_mitochondrial_genome_with_CIRCOS are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Location of structural errors in a genome assembly and structural variations between a pair of genomes☆11Sep 27, 2019Updated 7 years ago
- Long read to reference genome mapping tool☆13Mar 14, 2024Updated 2 years ago
- ☆16Apr 10, 2024Updated 2 years ago
- 🚝RAILS and 👞🔨Cobbler: Assembly Improvement by Long Sequence Scaffolding/Gap-filling☆27Apr 1, 2026Updated 7 months ago
- Gap2Seq is a gap filling and insertion genotyping tool.☆22Aug 12, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A loose collection of scripts and utilities for processing and analyzing the Goat reference genome assembly☆11Feb 28, 2017Updated 9 years ago
- a tool for predicting mitochondrial DNA deletions using soft-clipping☆23Feb 3, 2022Updated 4 years ago
- Taxon-aware analysis of clustered protein sequences☆31Jul 1, 2024Updated 2 years ago
- In-silico PCR amplification on complete genomes☆11Oct 19, 2026Updated 2 weeks ago
- semi-reference-based short read compression☆11Mar 5, 2019Updated 7 years ago
- Reduction of Althaps and Duplicate Contigs for Improved Downstream Analysis☆21Oct 2, 2026Updated 3 weeks ago
- ☆28Apr 9, 2025Updated last year
- Fast in-silico normalization algorithm for NGS data☆25Nov 1, 2021Updated 5 years ago
- Code to perform homolog detectability analyses as described in Weisman et al. 2020 (https://www.biorxiv.org/content/10.1101/2020.02.27.96…☆18Nov 18, 2024Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Analyze and simulate Pool-Seq time series data☆18Jun 16, 2022Updated 4 years ago
- Genome assembly soft-masking using Red (REpeat Detector)☆18Dec 7, 2018Updated 7 years ago
- MetaMLST is a computational tool for in-silico Multi-Locus Sequence Typing from metagenomic data.☆16Mar 2, 2023Updated 3 years ago
- Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to visualise the contents of genome assembly data sets as a …☆47May 27, 2022Updated 4 years ago
- ☆13Sep 11, 2025Updated last year
- Layout module for raw de novo genome assembly of long uncorrected reads.☆21Feb 2, 2021Updated 5 years ago
- Bioinformatics / Explore oligonucleotide composition similarity between assembly contigs or scaffolds to detect contaminant DNA.☆12Feb 27, 2019Updated 7 years ago
- a long-read error correction tool using the multi-string Burrows Wheeler Transform☆44Jul 7, 2020Updated 6 years ago
- Scaffolding of genomic assemblies with RNA seq data☆15Oct 8, 2015Updated 11 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Hybrid error correction of long reads using colored de Bruijn graphs☆109Jan 17, 2026Updated 9 months ago
- Code to create a PRG from a Multiple Sequence Alignment file☆26Sep 10, 2025Updated last year
- Ruby library for handling GFA files☆17Jul 10, 2025Updated last year
- Validate and edit small eukaryotic genome assemblies☆33Apr 28, 2023Updated 3 years ago
- recompute GFA link overlaps☆26Sep 14, 2022Updated 4 years ago
- A fast tool for hybrid genome assembly of long and short reads☆78Apr 22, 2020Updated 6 years ago
- ⛓ Long Interval Nucleotide K-mer Scaffolder☆73Jun 4, 2026Updated 4 months ago
- pipeline for pseudogene prediction and analysis☆11Jan 26, 2023Updated 3 years ago
- This repo is deprecated. Please use gfatools instead.☆15Aug 17, 2018Updated 8 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- An Illumina PE genome contig assembler, can handle large (17Gbp) complex (hexaploid) genomes.☆46Nov 25, 2022Updated 3 years ago
- Genome assembly by maximum likelihood☆11Oct 3, 2017Updated 9 years ago
- Unzip assembly graphs with Hi-C data and/or long reads.☆29May 7, 2026Updated 5 months ago
- ☆46Apr 18, 2026Updated 6 months ago
- PanGenome Graph Building with the first 100 assemblies from the 1000G ONT Sequencing Consortium☆14Apr 5, 2025Updated last year
- Notes on DNA methylation analysis☆12Aug 11, 2026Updated 2 months ago
- ☆18Nov 16, 2015Updated 10 years ago