lbcb-sci / ra
Assembler for raw de novo genome assembly of long uncorrected reads.
☆37Updated 5 years ago
Alternatives and similar repositories for ra:
Users that are interested in ra are comparing it to the libraries listed below
- Exact Tandem Repeat Finder (not a TRF replacement)☆48Updated 5 years ago
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago
- Improved Phased Assembler☆28Updated 3 years ago
- A bioinformatics tutorial demonstrating a best-practice workflow to review a flowcell's sequence_summary.txt☆30Updated 4 years ago
- Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads☆22Updated 2 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆60Updated 4 years ago
- Converting and demultiplexing of PacBio BAM files into gzipped fasta and fastq files.☆37Updated 2 years ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆56Updated 3 years ago
- URMAP ultra-fast read mapper☆38Updated 4 years ago
- Compute N50/NG50 and auN/auNG☆31Updated last year
- A Nextflow workflow to generate lift over files for any pair of genomes☆64Updated last week
- Miscellaneous scripts for applications of PacBio systems☆27Updated 2 years ago
- Structural variant caller☆54Updated 3 years ago
- Remove lambda phage reads from a fastq file☆29Updated 2 years ago
- An easy way to run BioNano genomic analysis☆27Updated 4 years ago
- Scripts to estimate genome size and coverage from kmer distribution generated by jellyfish☆56Updated 2 years ago
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆35Updated this week
- ☆26Updated 5 years ago
- Method to optimally select samples for validation and resequencing☆27Updated 4 years ago
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆55Updated last year
- Assembly by Reduced Complexity (ARC)☆41Updated 9 years ago
- Population-wide Deletion Calling☆35Updated 7 months ago
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆74Updated 8 years ago
- ☆35Updated 5 years ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆37Updated last year
- ☆32Updated 4 years ago
- A draft genome scaffolder that uses multiple reference genomes in a graph-based approach.☆44Updated 4 years ago
- catalog for long-read sequencing tools☆32Updated 2 years ago
- Segmental Duplication Assembler (SDA).☆44Updated last year