lbcb-sci / raLinks
Assembler for raw de novo genome assembly of long uncorrected reads.
☆37Updated 5 years ago
Alternatives and similar repositories for ra
Users that are interested in ra are comparing it to the libraries listed below
Sorting:
- Exact Tandem Repeat Finder (not a TRF replacement)☆49Updated 5 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆60Updated 5 years ago
- Improved Phased Assembler☆28Updated 3 years ago
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago
- Compute N50/NG50 and auN/auNG☆32Updated last year
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆74Updated 8 years ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- URMAP ultra-fast read mapper☆39Updated 5 years ago
- Converting and demultiplexing of PacBio BAM files into gzipped fasta and fastq files.☆37Updated 2 years ago
- A bioinformatics tutorial demonstrating a best-practice workflow to review a flowcell's sequence_summary.txt☆30Updated 4 years ago
- Structural variant caller☆54Updated 3 years ago
- Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads☆22Updated 2 years ago
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆38Updated 2 months ago
- catalog for long-read sequencing tools☆32Updated 2 years ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆42Updated last year
- Find Unique genomic Regions☆30Updated 2 months ago
- Toolkit for preparing genomes for submission to NCBI☆30Updated 3 years ago
- genomic alignment similarity search tool☆18Updated last month
- PoSeiDon: positive selection detection and recombination analysis pipeline☆38Updated 4 months ago
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆56Updated last year
- A snakemake pipeline to assembly, polishing, correction and quality check from Oxford nanopore reads.☆36Updated 2 months ago
- A simple tool to fix PacBio fasta/q that was not properly split into subreads☆15Updated 4 years ago
- Miscellaneous scripts for applications of PacBio systems☆27Updated 3 years ago
- Improve the quality of a denovo assembly by scaffolding and gap filling☆57Updated 4 years ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated 2 months ago
- Extract metagenome-assembled genomes (MAGs) from metagenomic data using Hi-C.☆23Updated 3 weeks ago
- Conditional Reciprocal Best Blast☆41Updated 8 years ago
- An easy way to run BioNano genomic analysis☆27Updated 4 years ago
- Population-wide Deletion Calling☆35Updated 2 months ago
- ☆32Updated 4 years ago