Assembler for raw de novo genome assembly of long uncorrected reads.
☆35Dec 11, 2019Updated 6 years ago
Alternatives and similar repositories for ra
Users that are interested in ra are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Layout module for raw de novo genome assembly of long uncorrected reads.☆21Feb 2, 2021Updated 5 years ago
- MarginPolish: Graph based assembly polishing☆47Nov 24, 2020Updated 5 years ago
- This repository is deprecated, please use the link to the right.☆23Dec 11, 2018Updated 7 years ago
- ✏️ Genome assembly polishing & SNV detection☆74Sep 10, 2026Updated 3 weeks ago
- H.E.L.E.N. (Homopolymer Encoded Long-read Error-corrector for Nanopore)☆73Oct 28, 2020Updated 5 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- [MOVED] Moved to paoloshasta/shasta. De novo assembly from Oxford Nanopore reads☆272Oct 13, 2022Updated 3 years ago
- Peregrine: Fast Genome Assembler Using SHIMMER Index☆102Feb 6, 2022Updated 4 years ago
- Validate and edit small eukaryotic genome assemblies☆32Apr 28, 2023Updated 3 years ago
- GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://www.nature.com/ncomms/2016/160415/ncomms11307/full/n…☆68Aug 30, 2022Updated 4 years ago
- A tool for Racon polishing of miniasm assemblies☆84Jul 24, 2026Updated 2 months ago
- A software to assemble chloroplast and mitochodrial genomes using PacBio data☆41May 21, 2020Updated 6 years ago
- Benchmarking of long-read assembly tools for bacterial whole genomes☆172Mar 15, 2021Updated 5 years ago
- ☆46Jun 21, 2020Updated 6 years ago
- Benchmark MinION assembler pipelines and publish your results in a heartbeat!☆15Feb 11, 2020Updated 6 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Suite of tools for use in genome assembly and consensus. Work in progress.☆31Mar 22, 2021Updated 5 years ago
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads☆245Dec 29, 2023Updated 2 years ago
- Scaffolding with RNA-seq read alignment☆21Jul 10, 2018Updated 8 years ago
- Reduction of Althaps and Duplicate Contigs for Improved Downstream Analysis☆21Oct 2, 2026Updated last week
- Tool (experimental) to compute layout from overlaps with spectral algorithm☆11Nov 28, 2017Updated 8 years ago
- HyPo: Super Fast & Accurate Polisher for Long Read Genome Assemblies☆67Feb 23, 2020Updated 6 years ago
- De novo genome assembler for long uncorrected reads☆235Nov 15, 2023Updated 2 years ago
- This tool is for users to upgrade their metagenomics assemblies using long reads. This includes fixing mis-assemblies and scaffolding/gap…☆13Mar 17, 2016Updated 10 years ago
- Graph-based mapping of long sequences, noisy or HiFi.☆55Oct 5, 2020Updated 6 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- High-quality Nanopore-only genome polisher☆71Aug 16, 2024Updated 2 years ago
- Filter of Pairwise Alignement☆45Jan 31, 2022Updated 4 years ago
- Yet Another Chimeric Read Detector☆88Nov 7, 2024Updated last year
- An accurate and ultra-fast hybrid genome assembler☆88Apr 10, 2024Updated 2 years ago
- A nextflow pipeline for polishing CLR assemblies☆18Feb 3, 2023Updated 3 years ago
- Hybrid error correction of long reads using colored de Bruijn graphs☆109Jan 17, 2026Updated 8 months ago
- Code for phasing SVs with SNPs☆54Mar 27, 2020Updated 6 years ago
- use long sequenced reads to close gaps in assemblies☆41Sep 4, 2018Updated 8 years ago
- A simple tool to fix PacBio fasta/q that was not properly split into subreads☆16Jun 10, 2021Updated 5 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Economic Genome Assembly from Low Coverage Illumina and Nanopore Data☆19Feb 15, 2022Updated 4 years ago
- Chromosome-level scaffolding using multiple references☆170Sep 8, 2024Updated 2 years ago
- ☆21Dec 13, 2023Updated 2 years ago
- SALSA: A tool to scaffold long read assemblies with Hi-C data☆189May 17, 2024Updated 2 years ago
- An Illumina PE genome contig assembler, can handle large (17Gbp) complex (hexaploid) genomes.☆46Nov 25, 2022Updated 3 years ago
- Redbean: A fuzzy Bruijn graph approach to long noisy reads assembly☆533Sep 27, 2023Updated 3 years ago
- ELECTOR: EvaLuator of Error Correction Tools for lOng Reads☆15May 27, 2021Updated 5 years ago