Assembler for raw de novo genome assembly of long uncorrected reads.
☆35Dec 11, 2019Updated 6 years ago
Alternatives and similar repositories for ra
Users that are interested in ra are comparing it to the libraries listed below
Sorting:
- Layout module for raw de novo genome assembly of long uncorrected reads.☆20Feb 2, 2021Updated 5 years ago
- MarginPolish: Graph based assembly polishing☆47Nov 24, 2020Updated 5 years ago
- Validate and edit small eukaryotic genome assemblies☆32Apr 28, 2023Updated 2 years ago
- H.E.L.E.N. (Homopolymer Encoded Long-read Error-corrector for Nanopore)☆73Oct 28, 2020Updated 5 years ago
- [MOVED] Moved to paoloshasta/shasta. De novo assembly from Oxford Nanopore reads☆274Oct 13, 2022Updated 3 years ago
- ✏️ Genome assembly polishing & SNV detection☆72Oct 3, 2025Updated 4 months ago
- Peregrine: Fast Genome Assembler Using SHIMMER Index☆102Feb 6, 2022Updated 4 years ago
- This repository is deprecated, please use the link to the right.☆23Dec 11, 2018Updated 7 years ago
- A tool for Racon polishing of miniasm assemblies☆78Sep 5, 2025Updated 5 months ago
- Benchmarking of long-read assembly tools for bacterial whole genomes☆170Mar 15, 2021Updated 4 years ago
- Scaffolding with RNA-seq read alignment☆21Jul 10, 2018Updated 7 years ago
- GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://www.nature.com/ncomms/2016/160415/ncomms11307/full/n…☆70Aug 30, 2022Updated 3 years ago
- ☆46Jun 21, 2020Updated 5 years ago
- Collection of utilities for working with PacBio-based assemblies☆13Apr 2, 2023Updated 2 years ago
- Scaffolding of genomic assemblies with RNA seq data☆15Oct 8, 2015Updated 10 years ago
- A software to assemble chloroplast and mitochodrial genomes using PacBio data☆40May 21, 2020Updated 5 years ago
- Filter of Pairwise Alignement☆44Jan 31, 2022Updated 4 years ago
- Graph-based mapping of long sequences, noisy or HiFi.☆55Oct 5, 2020Updated 5 years ago
- Tool (experimental) to compute layout from overlaps with spectral algorithm☆11Nov 28, 2017Updated 8 years ago
- HyPo: Super Fast & Accurate Polisher for Long Read Genome Assemblies☆65Feb 23, 2020Updated 6 years ago
- Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding☆20Mar 3, 2025Updated 11 months ago
- Economic Genome Assembly from Low Coverage Illumina and Nanopore Data☆19Feb 15, 2022Updated 4 years ago
- Simultaneous multi-sample transcript assembler for RNA-seq data☆18Dec 13, 2024Updated last year
- Suite of tools for use in genome assembly and consensus. Work in progress.☆31Mar 22, 2021Updated 4 years ago
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads☆236Dec 29, 2023Updated 2 years ago
- Long read to reference genome mapping tool☆13Mar 14, 2024Updated last year
- Compare different genome alignment tools using a wide range of genomes with different complexities.☆14Dec 3, 2022Updated 3 years ago
- An accurate and ultra-fast hybrid genome assembler☆87Apr 10, 2024Updated last year
- SALSA: A tool to scaffold long read assemblies with Hi-C data☆188May 17, 2024Updated last year
- High-quality Nanopore-only genome polisher☆69Aug 16, 2024Updated last year
- Hybrid error correction of long reads using colored de Bruijn graphs☆108Jan 17, 2026Updated last month
- alignment to variation graph inducer☆157Jan 20, 2026Updated last month
- Yet Another Chimeric Read Detector☆85Nov 7, 2024Updated last year
- The Dagstuhl Format for Assembly☆13Oct 16, 2017Updated 8 years ago
- This tool is for users to upgrade their metagenomics assemblies using long reads. This includes fixing mis-assemblies and scaffolding/gap…☆13Mar 17, 2016Updated 9 years ago
- Benchmark MinION assembler pipelines and publish your results in a heartbeat!☆15Feb 11, 2020Updated 6 years ago
- reference free variant assembly☆34Jul 14, 2023Updated 2 years ago
- URMAP ultra-fast read mapper☆38Jun 15, 2020Updated 5 years ago
- Sequence Distance Graph framework: graph + reads + mapping + analysis☆25Jun 4, 2022Updated 3 years ago