Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes
☆15Jun 26, 2018Updated 7 years ago
Alternatives and similar repositories for ideel
Users that are interested in ideel are comparing it to the libraries listed below
Sorting:
- Assembly Likelihood Estimator☆35Mar 18, 2023Updated 2 years ago
- A methodology to rapidly leverage whole genome sequencing of bacterial isolates for clinical identification.☆35Dec 2, 2024Updated last year
- ☆10Apr 16, 2025Updated 10 months ago
- Mycobacterium tuberculosis genomic analysis from Nanopore sequencing data☆13Jun 12, 2024Updated last year
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆54May 16, 2023Updated 2 years ago
- Identifying ViRal and Circular content in metAgenomes☆14Dec 13, 2018Updated 7 years ago
- Quickly get coverage statistics given reads and an assembly☆16May 13, 2024Updated last year
- Experiments with using BIGSI data structure for metagenomic and QC applications☆19Aug 12, 2024Updated last year
- A tool for sniffing out the differences in vari-Ants☆38Jan 28, 2026Updated last month
- Genome size estimation from long read overlaps☆81Feb 19, 2026Updated last week
- tool to determine optimal refrerence genome given a set of fasta files☆15May 18, 2023Updated 2 years ago
- Calculate genome wide average nucleotide identity (gwANI) for a multiFASTA alignment☆16Dec 5, 2018Updated 7 years ago
- Graph-based assembly phasing☆91Nov 25, 2025Updated 3 months ago
- ☆15Jun 27, 2024Updated last year
- A plant organellar Graphical Fragment Assembly toolkit☆16Sep 10, 2025Updated 5 months ago
- Variant call verification☆16May 12, 2025Updated 9 months ago
- A pipeline for bioinformatics analysis of bacterial genomes☆32Updated this week
- Interactive, web tool for exploring pan-genome of bacterial strains☆49Jan 14, 2026Updated last month
- A fast tool for hybrid genome assembly of long and short reads☆78Apr 22, 2020Updated 5 years ago
- Output FASTQ summary statistics in JSON format☆29Oct 30, 2022Updated 3 years ago
- MUMmer3☆17Jan 12, 2022Updated 4 years ago
- Population analysis PIPEline 🛠🧬☆22Feb 3, 2026Updated 3 weeks ago
- Split k-mer analysis – version 2☆104Jan 29, 2026Updated last month
- transposable element typing pipeline☆19Mar 8, 2024Updated last year
- Finding regions of similarity between plasmids☆17Nov 2, 2022Updated 3 years ago
- PopPUNK 👨🎤 (POPulation Partitioning Using Nucleotide Kmers)☆104Feb 9, 2026Updated 2 weeks ago
- Phasing of dikaryotic fungal genome assemblies☆13Mar 1, 2023Updated 2 years ago
- PGR-TK: Pangenome Research Tool Kit☆21Mar 13, 2025Updated 11 months ago
- Course materials for the Advanced Courses Working With Pathogen Genomes course run virtually in Asia 10-14 May 2021☆10Jul 5, 2024Updated last year
- ☆13May 27, 2025Updated 9 months ago
- Genome-wide TR catalog and variation clusters described in [Weisburd, Dolzhenko, et al. 2024]☆17Feb 19, 2026Updated last week
- Long-read metagenomic analysis☆110Oct 10, 2023Updated 2 years ago
- ♥ Efficient Estimation of Evolutionary Distances☆47Feb 15, 2026Updated last week
- ☆20Feb 12, 2026Updated 2 weeks ago
- Bayesian inference of ancestral dates on bacterial phylogenetic trees☆95Dec 9, 2025Updated 2 months ago
- Evaluating Nanopore-based bacterial variant calling☆21Jul 23, 2025Updated 7 months ago
- Multi-platform genome assembly pipeline for Illumina, Nanopore and PacBio reads☆64Jan 22, 2026Updated last month
- Pan-genome inference and genotyping with long noisy or short accurate reads☆119Dec 13, 2024Updated last year
- ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes☆120May 21, 2024Updated last year