Alternatives and similar repositories for panagram

Users that are interested in panagram are comparing it to the libraries listed below

• PacificBiosciences / jasmine
  Call select base modifications in PacBio HiFi reads
  ☆15Updated last month
• Gaius-Augustus / TSEBRA
  TSEBRA: Transcript Selector for BRAKER
  ☆49Updated 3 weeks ago
• TF-Chan-Lab / panGraphViewer
  Show pangenome graphs in an easy way
  ☆56Updated 4 months ago
• KamilSJaron / k-mer-approaches-for-biodiversity-genomics
  k-mer learning materials
  ☆80Updated 9 months ago
• yangao07 / longcallD
  A local-haplotagging-based small and structural variant caller
  ☆89Updated 2 weeks ago
• mapleforest / HaploMerger2
  ☆45Updated 9 years ago
• KolmogorovLab / hapdup
  Pipeline to convert a haploid assembly into diploid
  ☆108Updated 10 months ago
• clemgoub / dnaPipeTE
  dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…
  ☆59Updated 2 years ago
• nanoporetech / duplex-tools
  Splitting of sequence reads by internal adapter sequence search
  ☆51Updated 2 years ago
• PombertLab / SYNY
  The SYNY pipeline investigates synteny between species by reconstructing protein clusters from gene pairs.
  ☆47Updated 5 months ago
• ChongLab / Inspector
  A tool for evaluate long-read de novo assembly results
  ☆48Updated last year
• shingocat / lrscaf
  TGS scaffolding
  ☆47Updated 4 years ago
• JustinChu / JupiterPlot
  A Circos-based tool to visualize genome assembly consistency or synteny between assemblies.
  ☆86Updated last year
• vikshiv / mumemto
  Mumemto: multi-MUM and MEM finding across pangenomes
  ☆124Updated 3 weeks ago
• piosierra / pantera
  Identification of transposable element families from pangenome polymorphisms
  ☆53Updated 6 months ago
• yeeus / GCI
  A program for assessing the T2T genome continuity
  ☆90Updated 2 months ago
• shilpagarg / DipAsm
  ☆78Updated 5 years ago
• Kuanhao-Chao / LiftOn
  🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies
  ☆115Updated 2 weeks ago
• dwinter / pafr
  Read, manipulate and visualize 'Pairwise mApping Format' data in R
  ☆76Updated 4 years ago
• Adamtaranto / teloclip
  A tool for the recovery of unassembled telomeres from soft-clipped read alignments.
  ☆50Updated 3 weeks ago
• lh3 / minipileup
  Simple pileup-based variant caller
  ☆94Updated 7 months ago
• genomeannotation / GAG
  Generates an NCBI .tbl file of annotations on a genome.
  ☆68Updated 7 years ago
• bcgsc / ntSynt
  Detecting multi-genome synteny using minimizer graph mapping
  ☆91Updated last week
• Maggi-Chen / Inspector
  A tool for evaluating long-read de novo assembly results
  ☆48Updated last year
• JanaSperschneider / FindTelomeres
  A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files
  ☆35Updated 3 years ago
• lh3 / srf
  SRF: Satellite Repeat Finder
  ☆99Updated last year
• arangrhie / merfin
  Evaluate variant calls and its combination with k-mer multiplicity
  ☆67Updated 3 years ago
• josephryan / estimate_genome_size.pl
  Scripts to estimate genome size and coverage from kmer distribution generated by jellyfish
  ☆57Updated 2 years ago
• PacificBiosciences / pbtk
  PacBio BAM toolkit
  ☆48Updated 9 months ago
• evotools / nf-LO
  A Nextflow workflow to generate lift over files for any pair of genomes
  ☆69Updated 3 weeks ago