☆68Feb 2, 2026Updated last month
Alternatives and similar repositories for panagram
Users that are interested in panagram are comparing it to the libraries listed below
Sorting:
- Genome Assembly 102☆17Apr 23, 2025Updated 10 months ago
- SV calling for diploid assemblies☆31Mar 22, 2024Updated last year
- recompute GFA link overlaps☆25Sep 14, 2022Updated 3 years ago
- convert variation graph alignments to coverage maps over nodes☆27Jan 21, 2026Updated last month
- Show pangenome graphs in an easy way☆59Aug 7, 2025Updated 7 months ago
- A web-based, interactive pangenome visualization tool☆21Apr 10, 2023Updated 2 years ago
- Long-read aligner to pangenome graphs☆29May 20, 2024Updated last year
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆37May 29, 2025Updated 9 months ago
- ☆38Oct 6, 2025Updated 5 months ago
- Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes☆44Oct 13, 2024Updated last year
- base-level dotplots from PAF alignments☆32Sep 18, 2025Updated 5 months ago
- Compare different genome alignment tools using a wide range of genomes with different complexities.☆14Dec 3, 2022Updated 3 years ago
- implicit pangenome graph☆90Updated this week
- ☆41Feb 15, 2026Updated 3 weeks ago
- ☆32Jan 3, 2025Updated last year
- Filter of Pairwise Alignement☆44Jan 31, 2022Updated 4 years ago
- COsine SImilarity-based Genotyper using pangenomes☆31Feb 13, 2026Updated 3 weeks ago
- ☆234Jan 24, 2025Updated last year
- General purpose utility related to GAF files☆29Jan 27, 2026Updated last month
- the pangenome graph evaluator☆29Apr 12, 2021Updated 4 years ago
- ☆30Aug 1, 2023Updated 2 years ago
- ☆44May 8, 2024Updated last year
- An experimental tool to estimate the similarity between all pairs of contigs☆40Apr 12, 2021Updated 4 years ago
- Mumemto: multi-MUM and MEM finding across pangenomes☆128Dec 8, 2025Updated 3 months ago
- Extracts subgraphs or components from a graph in GFA format☆24Nov 18, 2024Updated last year
- an interactive visualization and interpretation framework of reference-projected pangenome graphs☆38Feb 15, 2025Updated last year
- Unzip assembly graphs with Hi-C data and/or long reads.☆27Sep 20, 2024Updated last year
- 🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies☆122Feb 24, 2026Updated last week
- Differential k-mer analysis☆40Jan 29, 2024Updated 2 years ago
- linearize and simplify variation graphs using blocked partial order alignment☆61Feb 25, 2026Updated last week
- GFA insert into GenomicSQLite☆49Jun 7, 2021Updated 4 years ago
- Code to create a PRG from a Multiple Sequence Alignment file☆25Sep 10, 2025Updated 5 months ago
- Genome browser hub for the T2T genomes and resources☆27Sep 26, 2025Updated 5 months ago
- ☆101Apr 22, 2024Updated last year
- Panacus is a tool for computing statistics for GFA-formatted pangenome graphs☆119Feb 3, 2026Updated last month
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆15Aug 10, 2025Updated 6 months ago
- PanPA is a tool for building panproteome graphs and aligning sequences back to the graphs.☆18Feb 26, 2026Updated last week
- alignment to variation graph inducer☆157Updated this week
- Identifying large scale inversions between two genomes by mapping genome 1's unique kmers onto genome 2.☆10Jun 6, 2025Updated 9 months ago