kjenike / panagram

Related projects ⓘ

Alternatives and complementary repositories for panagram

• daewoooo / SVbyEye
  ☆72Updated last month
• TF-Chan-Lab / panGraphViewer
  Show pangenome graphs in an easy way
  ☆53Updated 2 years ago
• mapleforest / HaploMerger2
  ☆43Updated 7 years ago
• Gaius-Augustus / TSEBRA
  TSEBRA: Transcript Selector for BRAKER
  ☆47Updated last week
• PacificBiosciences / jasmine
  Predict 5mC in PacBio HiFi reads
  ☆32Updated this week
• clemgoub / dnaPipeTE
  dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…
  ☆51Updated last year
• Kuanhao-Chao / LiftOn
  🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies
  ☆64Updated last month
• nanoporetech / duplex-tools
  Splitting of sequence reads by internal adapter sequence search
  ☆52Updated last year
• marschall-lab / panacus
  Panacus is a tool for computing statistics for GFA-formatted pangenome graphs
  ☆85Updated 3 weeks ago
• ChongLab / Inspector
  A tool for evaluate long-read de novo assembly results
  ☆42Updated 2 months ago
• JanaSperschneider / FindTelomeres
  A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files
  ☆33Updated 2 years ago
• dwinter / pafr
  Read, manipulate and visualize 'Pairwise mApping Format' data in R
  ☆68Updated 3 years ago
• shingocat / lrscaf
  TGS scaffolding
  ☆45Updated 3 years ago
• shilpagarg / DipAsm
  ☆77Updated 4 years ago
• KolmogorovLab / hapdup
  Pipeline to convert a haploid assembly into diploid
  ☆92Updated 6 months ago
• bonsai-team / Porechop_ABI
  Adapter trimmer for Oxford Nanopore reads using ab initio method
  ☆37Updated 11 months ago
• colindaven / awesome-pangenomes
  A list of software for pangenomics
  ☆85Updated last week
• PombertLab / SYNY
  The SYNY pipeline investigates synteny between species by reconstructing protein clusters from gene pairs.
  ☆38Updated 2 weeks ago
• niccw / repeatcraftp
  meta-pipeline for repetitive element de-fragmentation and annotation
  ☆24Updated 4 years ago
• josephryan / estimate_genome_size.pl
  Scripts to estimate genome size and coverage from kmer distribution generated by jellyfish
  ☆56Updated last year
• lh3 / minipileup
  Simple pileup-based variant caller
  ☆83Updated 7 months ago
• PacificBiosciences / pb-human-wgs-workflow-snakemake
  DEPRECATED - Workflow for the comprehensive detection and prioritization of variants in human genomes with PacBio HiFi reads
  ☆38Updated last year
• rhysf / Synima
  Synteny Imager
  ☆60Updated 2 months ago
• obenno / ShinySyn
  A shiny application to visualize MCscan result
  ☆33Updated 2 years ago
• Adamtaranto / teloclip
  A tool for the recovery of unassembled telomeres from soft-clipped read alignments.
  ☆35Updated last week
• kakitone / finishingTool
  finshingTool
  ☆54Updated 7 years ago
• aubombarely / Organelle_PBA
  A software to assemble chloroplast and mitochodrial genomes using PacBio data
  ☆37Updated 4 years ago
• genomeannotation / GAG
  Generates an NCBI .tbl file of annotations on a genome.
  ☆65Updated 6 years ago