Alternatives and similar repositories for panagram

Users that are interested in panagram are comparing it to the libraries listed below

• PacificBiosciences / jasmine
  Call select base modifications in PacBio HiFi reads
  ☆15Updated last month
• yangao07 / longcallD
  A local-haplotagging-based small and structural variant caller
  ☆90Updated 2 weeks ago
• TF-Chan-Lab / panGraphViewer
  Show pangenome graphs in an easy way
  ☆56Updated 4 months ago
• Gaius-Augustus / TSEBRA
  TSEBRA: Transcript Selector for BRAKER
  ☆49Updated last month
• KamilSJaron / k-mer-approaches-for-biodiversity-genomics
  k-mer learning materials
  ☆81Updated 10 months ago
• mapleforest / HaploMerger2
  ☆45Updated 9 years ago
• vikshiv / mumemto
  Mumemto: multi-MUM and MEM finding across pangenomes
  ☆126Updated 3 weeks ago
• shingocat / lrscaf
  TGS scaffolding
  ☆47Updated 4 years ago
• KolmogorovLab / hapdup
  Pipeline to convert a haploid assembly into diploid
  ☆109Updated 11 months ago
• clemgoub / dnaPipeTE
  dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…
  ☆59Updated 2 years ago
• Adamtaranto / teloclip
  A tool for the recovery of unassembled telomeres from soft-clipped read alignments.
  ☆50Updated last month
• ChongLab / Inspector
  A tool for evaluate long-read de novo assembly results
  ☆48Updated last year
• dwinter / pafr
  Read, manipulate and visualize 'Pairwise mApping Format' data in R
  ☆76Updated 4 years ago
• shilpagarg / DipAsm
  ☆78Updated 5 years ago
• nanoporetech / duplex-tools
  Splitting of sequence reads by internal adapter sequence search
  ☆51Updated 2 years ago
• lh3 / srf
  SRF: Satellite Repeat Finder
  ☆101Updated last year
• yeeus / GCI
  A program for assessing the T2T genome continuity
  ☆92Updated 2 weeks ago
• koszullab / instaGRAAL
  Large genome reassembly based on Hi-C data, continuation of GRAAL
  ☆43Updated last year
• kakitone / finishingTool
  finshingTool
  ☆54Updated 9 years ago
• piosierra / pantera
  Identification of transposable element families from pangenome polymorphisms
  ☆54Updated 6 months ago
• bcgsc / ntSynt
  Detecting multi-genome synteny using minimizer graph mapping
  ☆93Updated last month
• JanaSperschneider / FindTelomeres
  A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files
  ☆36Updated 3 years ago
• PombertLab / SYNY
  The SYNY pipeline investigates synteny between species by reconstructing protein clusters from gene pairs.
  ☆49Updated last week
• JustinChu / JupiterPlot
  A Circos-based tool to visualize genome assembly consistency or synteny between assemblies.
  ☆88Updated last year
• Maggi-Chen / Inspector
  A tool for evaluating long-read de novo assembly results
  ☆49Updated last year
• lh3 / minipileup
  Simple pileup-based variant caller
  ☆95Updated 8 months ago
• rhysf / Synima
  Synteny Imager
  ☆65Updated last week
• arangrhie / merfin
  Evaluate variant calls and its combination with k-mer multiplicity
  ☆67Updated 3 years ago
• PacificBiosciences / pbtk
  PacBio BAM toolkit
  ☆48Updated 10 months ago
• SAMtoBAM / MUMandCo
  MUM&Co is a simple bash script that uses Whole Genome Alignment information provided by MUMmer (only v4) to detect Structural Variation
  ☆75Updated 3 months ago