ZhaiLab-SUSTech / snuupyLinks
single-nucleus nanopore reads processing pipeline
☆15Updated last year
Alternatives and similar repositories for snuupy
Users that are interested in snuupy are comparing it to the libraries listed below
Sorting:
- ☆37Updated 5 years ago
- single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…☆24Updated 11 months ago
- scripts for analyzing the CVDC data.☆18Updated 5 years ago
- ☆26Updated 3 years ago
- Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files☆14Updated last year
- ☆36Updated 2 years ago
- SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3☆38Updated 5 years ago
- code associated with crane-nature-2015, 10.1038/nature14450☆35Updated 9 years ago
- Long-read Isoform Quantification and Analysis☆38Updated 3 months ago
- SingleCell Nanopore sequencing data analysis☆60Updated 3 weeks ago
- A tool for sample swap identification in high throughput sequencing studies☆10Updated 3 months ago
- A Perl/R pipeline for plotting metagenes☆37Updated 3 years ago
- ☆11Updated 5 years ago
- A Deep Learning-Based Model for Quantifying Transposable Elements in Single-Cell Sequencing Data☆27Updated 2 months ago
- A Python implementation of the original DI domain caller☆12Updated 4 years ago
- BS-Seeker3: An Ultra-fast, Versatile Pipeline for Mapping Bisulfite-treated Reads.☆27Updated 5 years ago
- ☆18Updated last year
- DiffDomain is a statistically sound method for detecting differential TADs between conditions☆18Updated 8 months ago
- ☆23Updated 4 years ago
- ☆22Updated 6 months ago
- ☆19Updated 10 months ago
- SEASTAR - Systematic Evaluation of Alternative transcription STArt site in RNA☆13Updated 7 years ago
- ☆17Updated 4 years ago
- TEProf2 Pipeline used to find promoters and predict protein sequences from RNA-sequencing data☆24Updated 2 years ago
- perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)☆65Updated 6 years ago
- A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains☆43Updated 2 years ago
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆46Updated 2 months ago
- 4C-seq processing pipeline☆23Updated 3 months ago
- ☆28Updated 6 months ago
- Bioinformatic analysis of RNA-Seq, WGBS, and Hi-C in Arabidopsis☆8Updated 5 years ago