ZhaiLab-SUSTech / snuupyLinks
single-nucleus nanopore reads processing pipeline
☆16Updated 2 years ago
Alternatives and similar repositories for snuupy
Users that are interested in snuupy are comparing it to the libraries listed below
Sorting:
- single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…☆26Updated last year
- ☆37Updated 6 years ago
- Micro DNA identification☆24Updated 4 years ago
- ☆22Updated 2 years ago
- A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains☆44Updated 3 years ago
- A Python implementation for BH-FDR and HiCCUPS☆52Updated 6 months ago
- Single-Cell Omics for Transcriptome CHaracterization (SCOTCH): isoform-level characterization of gene expression through long-read single…☆16Updated 3 weeks ago
- ☆12Updated 6 years ago
- scripts for analyzing the CVDC data.☆19Updated 5 years ago
- ChIA-PET, HiChIP, PLAC-Seq data analysis, with linker detection, linker filter, or restriction process for HiChIP, mapping, call cluster …☆21Updated last year
- code associated with crane-nature-2015, 10.1038/nature14450☆36Updated 10 years ago
- Full-length transcriptome splicing and mutation analysis☆84Updated last year
- Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files☆15Updated last year
- GIREMI is a method that can identify RNA editing sites using one RNA-seq data set without requiring genome sequence data.☆44Updated 8 years ago
- Single Cell Long Read is a suite of tools dedicated to Cell barcode / UMI assignment and analysis of highly multiplexed single cell Nanop…☆76Updated 2 years ago
- Long-read Isoform Quantification and Analysis☆38Updated 7 months ago
- Main repository for Drews et al. (Nature, 2022)☆42Updated 2 years ago
- TEProf2 Pipeline used to find promoters and predict protein sequences from RNA-sequencing data☆27Updated 2 years ago
- A Python implementation of the original DI domain caller☆12Updated 5 years ago
- SingleCell Nanopore sequencing data analysis☆61Updated 5 months ago
- ☆38Updated 2 years ago
- HiC for copy Number variation and Translocation detection☆39Updated 4 years ago
- ENCODE long read RNA-seq pipeline☆51Updated 2 years ago
- SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3☆38Updated 5 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆41Updated 3 years ago
- ☆22Updated 5 years ago
- CALDER is a Hi-C analysis tool that allows: (1) compute chromatin domains from whole chromosome contacts; (2) derive their non-linear hie…☆24Updated 7 months ago
- 4C-seq processing pipeline☆26Updated 7 months ago
- A collection of tools to deal with Bisulfite-seq/NOMe-seq (SNP/Methylation calling: BisSNP; HMM segmentation: DMNTools; Visualization/Clu…☆32Updated 4 years ago
- ☆17Updated 6 years ago