ZhaiLab-SUSTech / snuupyLinks
single-nucleus nanopore reads processing pipeline
☆16Updated 2 years ago
Alternatives and similar repositories for snuupy
Users that are interested in snuupy are comparing it to the libraries listed below
Sorting:
- single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…☆26Updated last year
- Single-Cell Omics for Transcriptome CHaracterization (SCOTCH): isoform-level characterization of gene expression through long-read single…☆18Updated last month
- Single Cell Long Read is a suite of tools dedicated to Cell barcode / UMI assignment and analysis of highly multiplexed single cell Nanop…☆78Updated 2 years ago
- 4C-seq processing pipeline☆26Updated 10 months ago
- Micro DNA identification☆23Updated 4 years ago
- Full-length transcriptome splicing and mutation analysis☆86Updated last year
- A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains☆45Updated 3 years ago
- scripts for analyzing the CVDC data.☆20Updated 6 years ago
- ☆22Updated 2 years ago
- Tutorial Website☆63Updated 5 years ago
- ☆37Updated 6 years ago
- perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)☆67Updated 6 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆41Updated 3 years ago
- HiC for copy Number variation and Translocation detection☆41Updated 4 years ago
- A Python implementation for BH-FDR and HiCCUPS☆53Updated last month
- ChIA-PET, HiChIP, PLAC-Seq data analysis, with linker detection, linker filter, or restriction process for HiChIP, mapping, call cluster …☆22Updated last year
- code associated with crane-nature-2015, 10.1038/nature14450☆36Updated 10 years ago
- Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files☆15Updated last year
- A Deep Learning-Based Model for Quantifying Transposable Elements in Single-Cell Sequencing Data☆32Updated 2 months ago
- ☆11Updated 5 years ago
- The analysis pipeline for FLEP-seq☆17Updated 2 years ago
- Main repository for Drews et al. (Nature, 2022)☆42Updated 2 years ago
- GIREMI is a method that can identify RNA editing sites using one RNA-seq data set without requiring genome sequence data.☆44Updated 8 years ago
- Enhanced and elegant flexible peak/loop/domain -calling and analysis tool for 1D/3D genomic data.☆52Updated 7 months ago
- A Perl/R pipeline for plotting metagenes☆37Updated 4 years ago
- SingleCell Nanopore sequencing data analysis☆63Updated 8 months ago
- An Optimized Nested TAD caller for Hi-C data☆25Updated 4 years ago
- SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3☆38Updated 5 years ago
- A collection of tools to deal with Bisulfite-seq/NOMe-seq (SNP/Methylation calling: BisSNP; HMM segmentation: DMNTools; Visualization/Clu…☆32Updated 4 years ago
- RNA editing tests☆17Updated 5 years ago