ZhaiLab-SUSTech / snuupyLinks
single-nucleus nanopore reads processing pipeline
☆16Updated 2 years ago
Alternatives and similar repositories for snuupy
Users that are interested in snuupy are comparing it to the libraries listed below
Sorting:
- single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…☆26Updated last year
- Full-length transcriptome splicing and mutation analysis☆84Updated last year
- Micro DNA identification☆24Updated 4 years ago
- ☆37Updated 6 years ago
- Single Cell Long Read is a suite of tools dedicated to Cell barcode / UMI assignment and analysis of highly multiplexed single cell Nanop…☆78Updated 2 years ago
- GIREMI is a method that can identify RNA editing sites using one RNA-seq data set without requiring genome sequence data.☆44Updated 8 years ago
- A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains☆44Updated 3 years ago
- Single-Cell Omics for Transcriptome CHaracterization (SCOTCH): isoform-level characterization of gene expression through long-read single…☆17Updated 2 weeks ago
- ☆22Updated 2 years ago
- HiC for copy Number variation and Translocation detection☆39Updated 4 years ago
- DiffDomain is a statistically sound method for detecting differential TADs between conditions☆17Updated 5 months ago
- SingleCell Nanopore sequencing data analysis☆62Updated 6 months ago
- A deep-learning framework for predicting a full range of structural variations from bulk and single-cell contact maps☆61Updated 3 months ago
- perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)☆67Updated 6 years ago
- CALDER is a Hi-C analysis tool that allows: (1) compute chromatin domains from whole chromosome contacts; (2) derive their non-linear hie…☆24Updated 7 months ago
- A Perl/R pipeline for plotting metagenes☆37Updated 4 years ago
- scripts for analyzing the CVDC data.☆20Updated 6 years ago
- A Deep Learning-Based Model for Quantifying Transposable Elements in Single-Cell Sequencing Data☆32Updated 3 weeks ago
- ☆17Updated 6 years ago
- ☆12Updated 6 years ago
- ☆38Updated 2 years ago
- DeCiFer is an algorithm that simultaneously selects mutation multiplicities and clusters SNVs by their corresponding descendant cell frac…☆22Updated last year
- ☆32Updated last year
- ☆10Updated 5 years ago
- 4C-seq processing pipeline☆26Updated 8 months ago
- A Python implementation for BH-FDR and HiCCUPS☆52Updated 7 months ago
- ChIA-PET, HiChIP, PLAC-Seq data analysis, with linker detection, linker filter, or restriction process for HiChIP, mapping, call cluster …☆21Updated last year
- CLIP-seq Analysis of Multi-mapped reads☆31Updated 4 years ago
- RNA editing tests☆17Updated 5 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆41Updated 3 years ago