ucagenomix / sicelore
Single Cell Long Read is a suite of tools dedicated to Cell barcode / UMI assignment and analysis of highly multiplexed single cell Nanopore long read sequencing data.
☆72Updated last year
Related projects ⓘ
Alternatives and complementary repositories for sicelore
- A method for circular DNA detection based on probabilistic mapping of ultrashort reads☆62Updated 3 months ago
- A Perl/R pipeline for plotting metagenes☆35Updated 3 years ago
- Allele-specific alignment sorting☆53Updated last year
- Dynamics analysis of Alternative PolyAdenylation from RNA-seq☆50Updated last year
- Tutorial Website☆53Updated 3 years ago
- TAD calling, phase imputation, 3D modeling and more for diploid single-cell Hi-C (Dip-C) and general Hi-C☆107Updated 3 years ago
- Publication quality NGS track plotting☆106Updated 2 years ago
- perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)☆64Updated 5 years ago
- Estimate locus specific human LINE-1 expression.☆31Updated 2 years ago
- HiC uniform processing pipeline☆57Updated last year
- HMMRATAC peak caller for ATAC-seq data☆98Updated 2 years ago
- ☆70Updated 6 months ago
- Fit-Hi-C is a tool for assigning statistical confidence estimates to chromosomal contact maps produced by genome-wide genome architecture…☆79Updated 2 years ago
- ☆37Updated last year
- ☆58Updated 3 months ago
- ☆53Updated 3 years ago
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆101Updated 4 months ago
- ☆72Updated this week
- Snakemake-based workflow for detecting structural variants in genomic data☆77Updated 8 months ago
- FEELnc : FlExible Extraction of LncRNA☆82Updated last month
- fork of RSeQC python RNAseq metrics suit of tools☆46Updated 5 years ago
- GIREMI is a method that can identify RNA editing sites using one RNA-seq data set without requiring genome sequence data.☆42Updated 7 years ago
- Extract 3D contacts (.pairs) from sequencing alignments☆104Updated 2 weeks ago
- Long-read Isoform Quantification and Analysis☆39Updated 3 months ago
- Comprehensive TE insertion identification with WGS/WES data from multiple sequencing technics☆102Updated 4 months ago
- toolbox for analysing BS-seq data, advance features in SNV, ASM and DMR☆62Updated 10 months ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆36Updated 2 years ago
- A quickstart tool for AmpliconArchitect. Performs all preliminary steps (alignment, CNV calling, seed interval detection) required prior …☆56Updated last month