ucagenomix / siceloreLinks
Single Cell Long Read is a suite of tools dedicated to Cell barcode / UMI assignment and analysis of highly multiplexed single cell Nanopore long read sequencing data.
☆75Updated 2 years ago
Alternatives and similar repositories for sicelore
Users that are interested in sicelore are comparing it to the libraries listed below
Sorting:
- ☆94Updated this week
- REDItools are python scripts to investigate RNA editing at genomic scale.☆67Updated 2 weeks ago
- A method for circular DNA detection based on probabilistic mapping of ultrashort reads☆64Updated last year
- A tool for the calculation of RNA-editing index for RNA seq data☆43Updated last year
- A computation framework for genome-wide detection of enhancer-hijacking events from chromatin interaction data in re-arranged genomes☆67Updated last year
- Full-length transcriptome splicing and mutation analysis☆84Updated last year
- GIREMI is a method that can identify RNA editing sites using one RNA-seq data set without requiring genome sequence data.☆44Updated 8 years ago
- TAD calling, phase imputation, 3D modeling and more for diploid single-cell Hi-C (Dip-C) and general Hi-C☆109Updated 4 years ago
- A Perl/R pipeline for plotting metagenes☆37Updated 3 years ago
- ☆62Updated last year
- Publication quality NGS track plotting☆114Updated 3 years ago
- Estimate locus specific human LINE-1 expression.☆36Updated 2 years ago
- Dynamics analysis of Alternative PolyAdenylation from RNA-seq☆61Updated last year
- ☆75Updated 3 months ago
- Quantification of transposable element expression using RNA-seq☆72Updated last year
- ☆58Updated 3 weeks ago
- Extract 3D contacts (.pairs) from sequencing alignments☆113Updated 3 weeks ago
- Software for Quantifying Interspersed Repeat Expression☆60Updated 3 years ago
- Fit-Hi-C is a tool for assigning statistical confidence estimates to chromosomal contact maps produced by genome-wide genome architecture…☆87Updated 2 years ago
- Allele-specific alignment sorting☆58Updated 2 years ago
- HiC uniform processing pipeline☆60Updated last year
- A quickstart tool for AmpliconArchitect. Performs all preliminary steps (alignment, CNV calling, seed interval detection) required prior …☆68Updated last month
- release version☆54Updated 3 years ago
- Workflows for processing RNA data for germline short variant discovery with GATK v4 and related tools☆78Updated 3 years ago
- perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)☆67Updated 6 years ago
- Tutorial Website☆59Updated 4 years ago
- ☆45Updated 2 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆39Updated 3 years ago
- SEASTAR - Systematic Evaluation of Alternative transcription STArt site in RNA☆13Updated 7 years ago
- ENCODE long read RNA-seq pipeline☆50Updated 2 years ago