ucagenomix / siceloreLinks
Single Cell Long Read is a suite of tools dedicated to Cell barcode / UMI assignment and analysis of highly multiplexed single cell Nanopore long read sequencing data.
☆75Updated 2 years ago
Alternatives and similar repositories for sicelore
Users that are interested in sicelore are comparing it to the libraries listed below
Sorting:
- A method for circular DNA detection based on probabilistic mapping of ultrashort reads☆66Updated last year
- ☆96Updated last week
- TAD calling, phase imputation, 3D modeling and more for diploid single-cell Hi-C (Dip-C) and general Hi-C☆113Updated 4 years ago
- REDItools are python scripts to investigate RNA editing at genomic scale.☆68Updated 3 months ago
- ☆63Updated last month
- Full-length transcriptome splicing and mutation analysis☆84Updated last year
- A tool for the calculation of RNA-editing index for RNA seq data☆45Updated last week
- Estimate locus specific human LINE-1 expression.☆39Updated last month
- A Perl/R pipeline for plotting metagenes☆37Updated 4 years ago
- A package for quantifying transposable elements at a locus level for RNAseq datasets.☆29Updated 8 months ago
- GIREMI is a method that can identify RNA editing sites using one RNA-seq data set without requiring genome sequence data.☆44Updated 8 years ago
- ☆59Updated 3 months ago
- ☆47Updated 2 years ago
- Quantification of transposable element expression using RNA-seq☆76Updated last year
- Fit-Hi-C is a tool for assigning statistical confidence estimates to chromosomal contact maps produced by genome-wide genome architecture…☆89Updated 3 years ago
- perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)☆67Updated 6 years ago
- Allele-specific alignment sorting☆59Updated 2 years ago
- Publication quality NGS track plotting☆114Updated 2 weeks ago
- release version☆54Updated 3 years ago
- trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and fu…☆97Updated last month
- Extract 3D contacts (.pairs) from sequencing alignments☆116Updated this week
- A computation framework for genome-wide detection of enhancer-hijacking events from chromatin interaction data in re-arranged genomes☆73Updated 2 years ago
- Software for Quantifying Interspersed Repeat Expression☆63Updated 3 years ago
- ☆78Updated 6 months ago
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆118Updated 2 weeks ago
- SingleCell Nanopore sequencing data analysis☆61Updated 4 months ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆41Updated 3 years ago
- ENCODE long read RNA-seq pipeline☆50Updated 2 years ago
- A quickstart tool for AmpliconArchitect. Performs all preliminary steps (alignment, CNV calling, seed interval detection) required prior …☆72Updated last week
- Workflows for processing RNA data for germline short variant discovery with GATK v4 and related tools☆80Updated 4 years ago