Linlab-slu / TSSr
☆11Updated 3 months ago
Alternatives and similar repositories for TSSr:
Users that are interested in TSSr are comparing it to the libraries listed below
- Long-read Isoform Quantification and Analysis☆39Updated 3 weeks ago
- Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files☆13Updated 9 months ago
- GENE-SWitCH project RNA-Seq analysis pipeline☆24Updated 8 months ago
- ☆24Updated 2 years ago
- Pipeline to identify isoforms from full-length cDNA sequencing data☆24Updated 8 months ago
- ☆33Updated last year
- ☆13Updated last year
- Analysis of TE contribution to features (transcripts or simple features). Includes utils to test enrichment.☆25Updated 5 years ago
- Tutorial Website☆55Updated 3 years ago
- New version of JACUSA -> 2.0☆23Updated this week
- ExOrthist: a pipeline to extract exon orthologies at any evolutionary distance.☆21Updated last month
- A Perl/R pipeline for plotting metagenes☆36Updated 3 years ago
- RNA editing quantification in deep transcriptome data☆15Updated 2 years ago
- 4C-seq processing pipeline☆22Updated 9 months ago
- ☆24Updated 3 months ago
- BS-Seeker3: An Ultra-fast, Versatile Pipeline for Mapping Bisulfite-treated Reads.☆27Updated 5 years ago
- ☆13Updated last year
- ☆17Updated 2 years ago
- Nanopore 3' end-capture sequencing (Begik et al., bioRxiv 2021)☆12Updated last year
- Identify and annotate TE-mediated insertions in long-read sequence data☆41Updated last year
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆40Updated 4 months ago
- optimization of ribosome P-site positioning in ribosome profiling data☆46Updated last year
- bioinformatic pipeline for GLORI☆18Updated 8 months ago
- ☆35Updated 5 years ago
- Quantitation and visualization of differential alternative splicing events☆10Updated last year
- Error correction of ONT transcript reads☆58Updated last year
- Simple library/pipeline to generate and handle Hi-C data.☆36Updated 2 months ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆37Updated 2 years ago
- A script to make downloading of SRA/GEO data easier☆31Updated last year
- tutorial on pggb☆31Updated 2 weeks ago