Alternatives and similar repositories for TSSr:

Users that are interested in TSSr are comparing it to the libraries listed below

• christopher-vollmers / Mandalorion
  Pipeline to identify isoforms from full-length cDNA sequencing data
  ☆24Updated 11 months ago
• WGLab / LIQA
  Long-read Isoform Quantification and Analysis
  ☆39Updated last month
• FAANG / analysis-TAGADA
  GENE-SWitCH project RNA-Seq analysis pipeline
  ☆25Updated 2 months ago
• josiegleeson / BamSlam
  Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files
  ☆14Updated last year
• LappalainenLab / lorals
  ☆33Updated 2 years ago
• LappalainenLab / lorals_paper_code
  ☆23Updated 2 years ago
• gexijin / shinygo
  ☆26Updated last month
• vborjesson / TC_hunter
  Locate transgenic insertion sites
  ☆11Updated 2 years ago
• PulverCyril / craTEs
  Estimate the cis-regulatory activity of transposable element (TEs) subfamilies
  ☆10Updated last year
• adamewing / tldr
  Identify and annotate TE-mediated insertions in long-read sequence data
  ☆41Updated last year
• Xinglab / lr2rmats
  Long read to rMATS
  ☆31Updated last year
• shimlab / BLAZE
  SingleCell Nanopore sequencing data analysis
  ☆57Updated 4 months ago
• Xinglab / espresso
  ☆61Updated 8 months ago
• AmpliconSuite / CoRAL
  Reconstruction of focal amplifications with long reads
  ☆20Updated 3 weeks ago
• hsinyenwu / RiboPlotR
  RiboPlotR package for Ribo-plot
  ☆15Updated last year
• deepomicslab / SpecHLA
  SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …
  ☆45Updated 3 weeks ago
• SziKayLeung / Whole_Transcriptome_Paper
  ☆18Updated last year
• mortazavilab / cerberus
  ☆19Updated 8 months ago
• olarerin / metaPlotR
  A Perl/R pipeline for plotting metagenes
  ☆37Updated 3 years ago
• nerettilab / RepEnrich2
  RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.
  ☆39Updated 3 years ago
• bioinfo-biols / CIRI-long
  Circular RNA Identification for Nanopore Sequencing
  ☆19Updated 11 months ago
• twlab / TEProf2Paper
  TEProf2 Pipeline used to find promoters and predict protein sequences from RNA-sequencing data
  ☆23Updated last year
• khuang28jhu / bs3
  BS-Seeker3: An Ultra-fast, Versatile Pipeline for Mapping Bisulfite-treated Reads.
  ☆27Updated 5 years ago
• a-slide / NanoCount
  EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2
  ☆59Updated 6 months ago
• ENCODE-DCC / long-read-rna-pipeline
  ENCODE long read RNA-seq pipeline
  ☆47Updated 2 years ago
• ylipacbio / IsoSeq3
  IsoSeq3 - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads
  ☆18Updated 6 years ago
• dieterich-lab / JACUSA2
  New version of JACUSA -> 2.0
  ☆24Updated this week
• BioinfoUNIBA / REDItools2
  ☆56Updated 3 years ago
• comprna / CHEUI
  Concurrent identification of m6A and m5C modifications in individual molecules from nanopore sequencing
  ☆39Updated 9 months ago
• BioinfoUNIBA / QEdit
  RNA editing quantification in deep transcriptome data
  ☆15Updated 2 years ago