Linlab-slu / TSSrLinks
☆12Updated last week
Alternatives and similar repositories for TSSr
Users that are interested in TSSr are comparing it to the libraries listed below
Sorting:
- Long-read Isoform Quantification and Analysis☆38Updated 9 months ago
- trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and fu…☆99Updated 3 weeks ago
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆64Updated last year
- Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files☆15Updated last year
- ☆64Updated 3 months ago
- ☆60Updated 5 months ago
- A deep-learning framework for predicting a full range of structural variations from bulk and single-cell contact maps☆61Updated 3 months ago
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆51Updated 2 months ago
- ENCODE long read RNA-seq pipeline☆52Updated 2 years ago
- Hi-C Interaction Frequency Inference (HIFI): High-resolution estimation of DNA-DNA interaction frequency from Hi-C data☆24Updated 3 years ago
- ☆38Updated 2 years ago
- Identify and annotate TE-mediated insertions in long-read sequence data☆46Updated 5 months ago
- ☆38Updated last year
- A method for circular DNA detection based on probabilistic mapping of ultrashort reads☆66Updated last year
- Simple library/pipeline to generate and handle Hi-C data.☆39Updated last year
- Pipeline to identify isoforms from full-length cDNA sequencing data☆26Updated 2 months ago
- Circular RNA Identification for Nanopore Sequencing☆22Updated last year
- ☆23Updated 3 years ago
- A Perl/R pipeline for plotting metagenes☆37Updated 4 years ago
- NANOME pipeline (Nanopore long-read sequencing consensus DNA methylation detection method and pipeline)☆34Updated 3 weeks ago
- SingleCell Nanopore sequencing data analysis☆62Updated 6 months ago
- A pipeline to detect chimeric transcripts derived from genes and transposable elements.☆34Updated 4 months ago
- The Flexible Demultiplexer☆37Updated 3 months ago
- Allele-specific alignment sorting☆61Updated 2 years ago
- New version of JACUSA -> 2.0☆30Updated 3 weeks ago
- Concurrent identification of m6A and m5C modifications in individual molecules from nanopore sequencing☆42Updated last year
- Deep learning model used to detect RNA m6a with read level based on the Nanopore direct RNA data.☆22Updated 3 years ago
- ☆34Updated 2 years ago
- perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)☆67Updated 6 years ago
- REDItools are python scripts to investigate RNA editing at genomic scale.☆69Updated 5 months ago