TSSr is an R/Bioconductor package for comprehensive analyses of transcription start site (TSS) data
☆11Sep 21, 2026Updated 2 weeks ago
Alternatives and similar repositories for TSSr
Users that are interested in TSSr are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Detection and couting alternative TSS in single cells☆17Apr 21, 2024Updated 2 years ago
- ☆11Sep 17, 2020Updated 6 years ago
- Publication Page for the Noack et al. 2021 Nature Neuroscience paper☆10Feb 7, 2022Updated 4 years ago
- A genome annotation pipeline that use short and long sequencing reads alignments from animal genomes☆30Sep 7, 2026Updated last month
- ☆18Apr 18, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Transposable element expression at unique loci in single cells with CELLO-seq☆12Jun 17, 2024Updated 2 years ago
- The analysis pipeline for FLEP-seq☆18Aug 18, 2023Updated 3 years ago
- Extracting gene sets from published pathway figures☆15May 23, 2023Updated 3 years ago
- R package for nucleotide conversion sequencing data analysis☆17Jan 13, 2026Updated 8 months ago
- ☆24Jul 30, 2025Updated last year
- IsoSeq3 - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads☆23Jun 5, 2018Updated 8 years ago
- Ultra-fast 5' and 3' demultiplexer☆31Apr 23, 2024Updated 2 years ago
- Predicting TF sequence-specificity similarity with weighted alignments☆13Oct 7, 2019Updated 7 years ago
- pyJASPAR: A Pythonic interface to JASPAR transcription factor motifs☆39Sep 16, 2026Updated 3 weeks ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- FLAME: Full Length Adjecency Matrix Enumeration - is a module that allows for the analysis of ONT Nanopore RNA long-read sequencing data.…☆12May 8, 2025Updated last year
- A pipeline for isoseq☆23Jun 8, 2018Updated 8 years ago
- A barcode demultiplexer for Oxford Nanopore long-read amplicon sequencing data☆10Nov 27, 2024Updated last year
- Single-Cell Omics for Transcriptome CHaracterization (SCOTCH): isoform-level characterization of gene expression through long-read single…☆25Oct 1, 2026Updated last week
- A robust Python tool for the annotation of 3’ UTRs☆25Aug 20, 2026Updated last month
- ☆68Mar 19, 2026Updated 6 months ago
- Technology agnostic long read analysis pipeline for transcriptomes☆162Jan 25, 2024Updated 2 years ago
- Interactive single cell RNA-seq analysis webserver!☆10Mar 15, 2023Updated 3 years ago
- Parsing tools for GTF (gene transfer format) files☆129Sep 29, 2026Updated last week
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Scripts for the analysis of TT-seq and DRB/TT-seq data.☆12Mar 11, 2020Updated 6 years ago
- ☆19Mar 8, 2023Updated 3 years ago
- This repository aims to serve as an index of the work described at Salmen & De Jonghe et. al 2022☆25Feb 21, 2022Updated 4 years ago
- ☆11Aug 10, 2023Updated 3 years ago
- ☆16Sep 16, 2026Updated 3 weeks ago
- Repository for modeling PRO-cap data with the BPNet-like model, ProCapNet.☆22Updated this week
- Coding Genome Reconstruction using Iso-Seq data☆60Oct 20, 2021Updated 4 years ago
- CORNAS is a fast method for reliable DEG calls in unreplicated conditions.☆13Jul 14, 2019Updated 7 years ago
- Giraffe_View is designed to help assess and visualize the accuracy of long-read sequencing datasets.☆13Sep 3, 2024Updated 2 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- A set of Shiny apps to provide interactive enrichment analysis and exploration of results.☆31Sep 15, 2026Updated 3 weeks ago
- ☆27May 8, 2022Updated 4 years ago
- RNA-Seq normalization and quantification pipeline☆12Nov 25, 2024Updated last year
- R package for visualization and exploratory analysis of Oxford Nanopore direct RNA seq based polyA predictions☆13Jun 25, 2024Updated 2 years ago
- Pipeline for testing shifts in poly(A) tail lengths estimated by nanopolish☆10May 5, 2020Updated 6 years ago
- ☆13Updated this week
- ☆17Mar 2, 2024Updated 2 years ago