ConesaLab / TCR_nextflowLinks
☆12Updated 3 years ago
Alternatives and similar repositories for TCR_nextflow
Users that are interested in TCR_nextflow are comparing it to the libraries listed below
Sorting:
- The Spatial Splicing-derived Neoantigen Identifier Pipeline (SSNIP) allows for the precise characterization of neoantigens derived from c…☆19Updated 4 months ago
- Code related to scRNA analysis using the scAmpi workflow☆27Updated 2 months ago
- Pipeline for Universal Mapping of ATAC-seq☆25Updated last year
- Advanced steps of the OSCA book☆13Updated 4 months ago
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated 2 years ago
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆24Updated 2 years ago
- Inference of TCR motifs☆32Updated 2 months ago
- 🧬 Gene analysis toolkit based on R☆57Updated 7 months ago
- Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis☆34Updated 3 years ago
- Single-cell/nuclei RNA-seq analysis tools in R for a complete workflow.☆57Updated last year
- Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours☆27Updated 4 years ago
- ☆49Updated last year
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆43Updated 4 years ago
- ☆20Updated last year
- Batch Correction and Adaptive Contrast Calling in Complex RNA-seq Experimental Designs Using DESeq2☆16Updated 3 months ago
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆29Updated 5 years ago
- Snakemake pipeline for benchmarking cell-type deconvolution methods and deconvolving real bulk RNA-seq data with the use of scRNA-seq dat…☆15Updated 3 months ago
- Code and analysis pipeline for Smart-seq3 (Hagemann-Jensen et al. 2020).☆54Updated 3 years ago
- RAGE-seq scripts☆18Updated 3 years ago
- Comprehensive pipeline for donor demultiplexing in single cell☆24Updated last week
- ☆47Updated 7 months ago
- ☆29Updated 10 months ago
- Interactive software tool for the assignment of cell types in single-cell studies.☆34Updated 2 years ago
- ☆26Updated 10 months ago
- An R/Bioconductor package to identify higher-order molecular phenotypes☆16Updated last year
- ☆39Updated 4 years ago
- Code to run the scHLApers pipeline for personalized single-cell HLA quantification☆17Updated last year
- Single-cell immune repertoire trajectory analysis in R☆11Updated 2 weeks ago
- An R package for Splice-aware quantification of translation using Ribo-seq data☆19Updated last year
- ☆44Updated 9 months ago