☆13Feb 17, 2022Updated 4 years ago
Alternatives and similar repositories for TCR_nextflow
Users that are interested in TCR_nextflow are comparing it to the libraries listed below
Sorting:
- ☆10May 31, 2022Updated 3 years ago
- Using TCR and expression for sequence embedding☆62Jan 6, 2026Updated last month
- Single-cell immune repertoire trajectory analysis in R☆11Aug 8, 2025Updated 6 months ago
- ☆11Mar 16, 2022Updated 3 years ago
- Bullseye analysis pipeline for DART-seq analysis☆15Jul 8, 2025Updated 7 months ago
- ☆14Mar 18, 2022Updated 3 years ago
- ☆12Sep 29, 2023Updated 2 years ago
- BioCarta pathway images☆11Jan 30, 2026Updated last month
- SODAR: System for Omics Data Access and Retrieval☆19Updated this week
- single-nucleus nanopore reads processing pipeline☆16Aug 16, 2023Updated 2 years ago
- Workflow for Nanopore Sequencing of 10x single cell libraries☆19Mar 20, 2025Updated 11 months ago
- Template for building your own portfolio☆27Jul 2, 2025Updated 7 months ago
- ☆22Jul 30, 2025Updated 7 months ago
- single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…☆26Jul 20, 2024Updated last year
- ☆25Oct 25, 2023Updated 2 years ago
- Collection of Tumor-Infiltrating Lymphocyte Single-Cell Experiments with TCR☆105Dec 18, 2025Updated 2 months ago
- ☆20Oct 5, 2022Updated 3 years ago
- TCRconv is a deep learning model for predicting recognition between T cell receptors and epitopes. It uses protBERT embeddings for the TC…☆26Oct 18, 2022Updated 3 years ago
- R implementation of GLIPH (Grouping of Lymphocyte Interactions by Paratope Hotspots), an algorithm developed by Glanville et al to identi…☆27Oct 1, 2022Updated 3 years ago
- ☆25Feb 2, 2024Updated 2 years ago
- Benchmarking long-read RNA-seq analysis tools☆27Feb 17, 2025Updated last year
- ☆27May 20, 2023Updated 2 years ago
- ☆32Jun 12, 2023Updated 2 years ago
- Long read to rMATS☆32May 5, 2023Updated 2 years ago
- Error correction and variant calling algorithm for nanopore sequencing☆26Apr 23, 2016Updated 9 years ago
- The Isoforms from Single-Cell; Long-read Expression Suite☆38Jan 14, 2025Updated last year
- ERGO-II, an updated version of ERGO including more features for TCR-peptide binding prediction☆34Apr 1, 2022Updated 3 years ago
- NetTCR-2.0. Sequence-based prediction of peptide-TCR binding☆36Mar 29, 2022Updated 3 years ago
- 10X single cell Nanopore reads simulation workflow. Complete documentation avialable at: https://GenomiqueENS.github.io/AsaruSim/☆13Jul 27, 2025Updated 7 months ago
- This repository contains a QSAR model that predicts the ability of a chemical compound to inhibit the gene associated with Alzheimer's, B…☆11Oct 1, 2021Updated 4 years ago
- Assign genotypes to Salmonella Paratyphi A isolates using their whole-genome data.☆10Mar 6, 2025Updated 11 months ago
- Clonal reconstruction from HTS data☆10Oct 27, 2021Updated 4 years ago
- ☆35Apr 2, 2025Updated 10 months ago
- ☆43Nov 8, 2024Updated last year
- A proof of concept RNA-Seq pipeline with Nextflow☆33Jan 13, 2021Updated 5 years ago
- Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…☆42Apr 18, 2024Updated last year
- Tidy R query API for the harmonised and curated CELLxGENE single-cell atlas.☆93Dec 18, 2024Updated last year
- MetaCompass: Reference-guided Assembly of Metagenomes☆42Aug 13, 2025Updated 6 months ago
- Integrating long read sequencing enhances short read-based locus-specific transposable element quantification☆10May 12, 2025Updated 9 months ago