ConesaLab / TCR_nextflow
☆12Updated 2 years ago
Alternatives and similar repositories for TCR_nextflow:
Users that are interested in TCR_nextflow are comparing it to the libraries listed below
- Comprehensive pipeline for donor demultiplexing in single cell☆24Updated 7 months ago
- An R package to plot maps of clone distributions in somatic evolution☆17Updated last year
- ☆44Updated 5 months ago
- ☆20Updated last year
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆23Updated 2 years ago
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆21Updated last year
- ☆29Updated last week
- Code repo for all analysis done for the 'Pan-cancer whole genome comparison of primary and metastatic solid tumors' study.☆15Updated last year
- ☆22Updated 2 years ago
- Code to run the scHLApers pipeline for personalized single-cell HLA quantification☆17Updated last year
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆29Updated 4 years ago
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆43Updated 3 years ago
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆16Updated 3 years ago
- QBRC Neoantigen calling pipeline with CSiN calculation embedded☆24Updated 2 years ago
- ☆18Updated 3 months ago
- ☆10Updated 3 years ago
- ☆19Updated 8 months ago
- ☆46Updated 3 weeks ago
- Snakemake pipeline for benchmarking cell-type deconvolution methods and deconvolving real bulk RNA-seq data with the use of scRNA-seq dat…☆15Updated 5 months ago
- Main repository for Drews et al. (Nature, 2022)☆39Updated last year
- Alleloscope is a method for allele-specific copy number estimation that can be applied to single cell DNA and ATAC sequencing data (separ…☆29Updated last year
- single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…☆23Updated 6 months ago
- cell type deconvolution for multi-condition bulk RNA-seq data☆22Updated 2 years ago
- a tool for summarizing and integrating gene-set analysis results☆16Updated 5 months ago
- Inference of TCR motifs☆28Updated this week
- Explore the cancer relevance of your gene list☆49Updated 4 months ago
- ☆24Updated last year
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated 2 years ago
- Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours☆26Updated 4 years ago
- Advanced steps of the OSCA book☆12Updated 3 weeks ago