ConesaLab / TCR_nextflowLinks
☆12Updated 3 years ago
Alternatives and similar repositories for TCR_nextflow
Users that are interested in TCR_nextflow are comparing it to the libraries listed below
Sorting:
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆25Updated 2 years ago
- Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.☆16Updated 3 years ago
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated 2 years ago
- ☆32Updated 8 months ago
- ☆51Updated last year
- Pipeline for Universal Mapping of ATAC-seq☆25Updated 3 weeks ago
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆16Updated 3 years ago
- A single cell sequencing read simulator.☆33Updated last year
- Code related to scRNA analysis using the scAmpi workflow☆27Updated 4 months ago
- ☆20Updated 2 years ago
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆44Updated 4 years ago
- The Spatial Splicing-derived Neoantigen Identifier Pipeline (SSNIP) allows for the precise characterization of neoantigens derived from c…☆20Updated 6 months ago
- Batch Correction and Adaptive Contrast Calling in Complex RNA-seq Experimental Designs Using DESeq2☆16Updated last week
- ☆47Updated 9 months ago
- An Integrated Analysis Pipeline for Unbiased ChIP seq Analysis☆22Updated last year
- Comprehensive pipeline for donor demultiplexing in single cell☆24Updated this week
- ☆24Updated 2 years ago
- binned motif enrichment analysis and visualisation☆41Updated last month
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆29Updated 5 years ago
- QBRC Neoantigen calling pipeline with CSiN calculation embedded☆24Updated 3 years ago
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆22Updated 2 years ago
- Inference of TCR motifs☆32Updated 4 months ago
- Single-cell/nuclei RNA-seq analysis tools in R for a complete workflow.☆57Updated last year
- Analysis pipeline for our circSC manuscript☆14Updated 3 years ago
- An R package to plot maps of clone distributions in somatic evolution☆17Updated last year
- Fast motif matching in R☆46Updated last year
- Docker container for genomics analyses in R.☆25Updated last year
- Single-cell immune repertoire trajectory analysis in R☆11Updated 2 months ago
- A continually expanding collection of RNA-seq tools☆52Updated last week
- ☆44Updated 11 months ago