ConesaLab / TCR_nextflow
☆12Updated 3 years ago
Alternatives and similar repositories for TCR_nextflow:
Users that are interested in TCR_nextflow are comparing it to the libraries listed below
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆24Updated 2 years ago
- ☆48Updated 8 months ago
- Code to run the scHLApers pipeline for personalized single-cell HLA quantification☆17Updated last year
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆22Updated last year
- A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions☆39Updated 2 years ago
- ☆30Updated 2 months ago
- ☆20Updated last year
- Code repo for all analysis done for the 'Pan-cancer whole genome comparison of primary and metastatic solid tumors' study.☆15Updated last year
- ☆27Updated last year
- simplified cellranger for long-read data☆18Updated this week
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆29Updated 5 years ago
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆16Updated 3 years ago
- ☆24Updated 6 months ago
- Scripts to install as a Bioconda package for making workflows☆18Updated 7 months ago
- Comprehensive pipeline for donor demultiplexing in single cell☆24Updated 10 months ago
- SCASA: Single cell transcript quantification tool☆21Updated last year
- scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data☆29Updated 2 years ago
- 🧬 Gene analysis toolkit based on R☆56Updated 3 months ago
- An R package to plot maps of clone distributions in somatic evolution☆17Updated last year
- Example of run CytoSig and reproduce prediction results on bulk and single-cell cohorts☆12Updated last year
- ☆19Updated 10 months ago
- splicekit: an integrative toolkit for splicing analysis from short-read RNA-seq☆16Updated 3 weeks ago
- QBRC Neoantigen calling pipeline with CSiN calculation embedded☆24Updated 3 years ago
- The Spatial Splicing-derived Neoantigen Identifier Pipeline (SSNIP) allows for the precise characterization of neoantigens derived from c…☆17Updated last week
- single cell Gene co-Expression Network Analysis☆9Updated 2 years ago
- cancereffectsizeR: Estimate somatic mutation rates and quantify selection in cancer☆18Updated last week
- ☆29Updated 2 years ago
- Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours☆26Updated 4 years ago
- Main repository for Drews et al. (Nature, 2022)☆39Updated last year
- Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.☆14Updated 2 years ago