DavidsonGroup / flexiplexLinks
The Flexible Demultiplexer
☆35Updated last month
Alternatives and similar repositories for flexiplex
Users that are interested in flexiplex are comparing it to the libraries listed below
Sorting:
- long read RNA-seq quantification☆90Updated last week
- Transcript discovery and quantification for long read single cell and spatial transcriptomics data using Bambu☆15Updated 2 weeks ago
- Somatic structural variant caller for long-read data☆80Updated last month
- LongcallR is a SNP caller for single molecule long-read RNA-seq data☆67Updated last month
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆64Updated last year
- fusion transcript detection using long reads, leveraging ctat-minimap2 and FusionInspector☆22Updated 3 weeks ago
- Set of tools to manipulate and visualize modified base bam files☆57Updated 3 years ago
- ☆50Updated 3 weeks ago
- Error correction of ONT transcript reads☆58Updated 2 years ago
- python plotly Circos from VCF☆40Updated last year
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆54Updated last year
- Copy number caller for long read data including SNV utilization☆67Updated 6 months ago
- A Snakemake workflow for calling Fiber-seq Inferred Regulatory Elements (FIREs) on single molecules.☆27Updated 3 months ago
- Human reference genome analysis sets☆55Updated 2 years ago
- Fast and accurate coordinate conversion between assemblies☆116Updated 2 weeks ago
- DEPRECATED - Workflow for the comprehensive detection and prioritization of variants in human genomes with PacBio HiFi reads☆39Updated 2 years ago
- Wally: Visualization of aligned sequencing reads and contigs☆119Updated 2 weeks ago
- Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files☆15Updated last year
- Genome annotation with PacBio Iso-Seq. Takes raw subreads as input, generate Full Length Non Chemiric (FLNC) sequences and produce a bed …☆48Updated last week
- A Nextflow workflow to generate lift over files for any pair of genomes☆69Updated 4 months ago
- Correct mismatches, microindels, and noncanonical splice junctions in long reads that have been mapped to the genome☆69Updated last year
- Long-read splice alignment with high accuracy☆63Updated last year
- Toolkit for calling structural variants using short or long reads☆109Updated last month
- A local-haplotagging-based small and structural variant caller☆86Updated last week
- Pore-C support☆53Updated 2 years ago
- Structural variant caller for real-time long-read sequencing data☆57Updated 2 years ago
- vcfdist: Accurately benchmarking phased variant calls☆83Updated last month
- SingleCell Nanopore sequencing data analysis☆61Updated 4 months ago
- Pipeline for annotating genomes using long read transcriptomics data with pinfish☆28Updated 4 years ago
- ClairS-TO - a deep-learning method for tumor-only somatic variant calling☆70Updated last week