DavidsonGroup / flexiplexLinks
The Flexible Demultiplexer
☆34Updated last week
Alternatives and similar repositories for flexiplex
Users that are interested in flexiplex are comparing it to the libraries listed below
Sorting:
- Somatic structural variant caller for long-read data☆79Updated 2 months ago
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆63Updated 10 months ago
- Error correction of ONT transcript reads☆58Updated last year
- LongcallR is a SNP caller for single molecule long-read RNA-seq data☆63Updated 3 weeks ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆54Updated 10 months ago
- ☆49Updated last year
- python plotly Circos from VCF☆38Updated last year
- long read RNA-seq quantification☆88Updated this week
- Set of tools to manipulate and visualize modified base bam files☆56Updated 3 years ago
- SingleCell Nanopore sequencing data analysis☆60Updated 3 months ago
- Transcript discovery and quantification for long read single cell and spatial transcriptomics data using Bambu☆15Updated 2 months ago
- Long-read splice alignment with high accuracy☆64Updated 11 months ago
- Copy number caller for long read data including SNV utilization☆66Updated 5 months ago
- Wally: Visualization of aligned sequencing reads and contigs☆118Updated 4 months ago
- ENCODE long read RNA-seq pipeline☆50Updated 2 years ago
- Genome annotation with PacBio Iso-Seq. Takes raw subreads as input, generate Full Length Non Chemiric (FLNC) sequences and produce a bed …☆45Updated last month
- Correct mismatches, microindels, and noncanonical splice junctions in long reads that have been mapped to the genome☆69Updated last year
- A Snakemake workflow for calling Fiber-seq Inferred Regulatory Elements (FIREs) on single molecules.☆24Updated 2 months ago
- Fast and accurate coordinate conversion between assemblies☆115Updated 5 months ago
- fusion transcript detection using long reads, leveraging ctat-minimap2 and FusionInspector☆22Updated 3 weeks ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆48Updated 5 years ago
- Structural variant caller for real-time long-read sequencing data☆57Updated 2 years ago
- Toolkit for calling structural variants using short or long reads☆108Updated 3 weeks ago
- DEPRECATED - Workflow for the comprehensive detection and prioritization of variants in human genomes with PacBio HiFi reads☆39Updated last year
- SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3☆38Updated 5 years ago
- Simple pileup-based variant caller☆91Updated 4 months ago
- Reference-free reconstruction and error correction of transcriptomes from Nanopore long-read sequencing☆58Updated last year
- ☆62Updated last year
- A Nextflow workflow to generate lift over files for any pair of genomes☆68Updated 2 months ago
- Long-read Isoform Quantification and Analysis☆38Updated 5 months ago