dieterich-lab / single-cell-nanopore
Workflow for Nanopore Sequencing of 10x single cell libraries
☆19Updated this week
Alternatives and similar repositories for single-cell-nanopore:
Users that are interested in single-cell-nanopore are comparing it to the libraries listed below
- ☆18Updated 11 months ago
- Long-read Isoform Quantification and Analysis☆39Updated 2 months ago
- Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files☆13Updated 11 months ago
- ☆33Updated last year
- ☆23Updated 2 years ago
- Nanopore 3' end-capture sequencing (Begik et al., bioRxiv 2021)☆12Updated last year
- Annotation and segmentation of MAS-seq data☆20Updated last year
- ☆23Updated 3 years ago
- single-nucleus nanopore reads processing pipeline☆15Updated last year
- An m6A-aware basecalling model to detect m6A modifications at single nucleotide resolution in individual reads (Cruciani, Delgado-Tejedo…☆15Updated last month
- A collection of tools to deal with Bisulfite-seq/NOMe-seq (SNP/Methylation calling: BisSNP; HMM segmentation: DMNTools; Visualization/Clu…☆31Updated 3 years ago
- Micro DNA identification☆22Updated 3 years ago
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆27Updated last year
- single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…☆24Updated 8 months ago
- SingleCell Nanopore sequencing data analysis☆56Updated 3 months ago
- ☆28Updated 3 months ago
- TEspeX - pipeline for Transposable Elements expression quantification☆20Updated last year
- Long read to rMATS☆31Updated last year
- Concurrent identification of m6A and m5C modifications in individual molecules from nanopore sequencing☆39Updated 8 months ago
- SEASTAR - Systematic Evaluation of Alternative transcription STArt site in RNA☆13Updated 7 years ago
- Reconstruction of focal amplifications with long reads☆18Updated last week
- Version II of Mandalorion☆32Updated 6 years ago
- Locate transgenic insertion sites☆11Updated 2 years ago
- Prediction of RNA modifications and their stoichiometry from per-read features: current intensity, dwell time and trace (Begik*, Lucas* e…☆23Updated 2 years ago
- Deep learning model used to detect RNA m6a with read level based on the Nanopore direct RNA data.☆22Updated 2 years ago
- 4C-seq processing pipeline☆23Updated last week
- ☆18Updated 7 months ago
- Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data☆34Updated 3 months ago
- Identify and annotate TE-mediated insertions in long-read sequence data☆41Updated last year
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆38Updated 3 years ago