dieterich-lab / single-cell-nanoporeLinks
Workflow for Nanopore Sequencing of 10x single cell libraries
☆19Updated 3 months ago
Alternatives and similar repositories for single-cell-nanopore
Users that are interested in single-cell-nanopore are comparing it to the libraries listed below
Sorting:
- ☆18Updated last year
- Long-read Isoform Quantification and Analysis☆38Updated 3 months ago
- Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files☆14Updated last year
- ☆36Updated 2 years ago
- An m6A-aware basecalling model to detect m6A modifications at single nucleotide resolution in individual reads (Cruciani, Delgado-Tejedo…☆16Updated 4 months ago
- Reconstruction of focal amplifications with long reads☆21Updated last week
- Version II of Mandalorion☆32Updated 6 years ago
- ☆22Updated 6 months ago
- ☆23Updated 2 years ago
- Long read to rMATS☆31Updated 2 years ago
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆28Updated 2 years ago
- ☆28Updated 6 months ago
- A collection of tools to deal with Bisulfite-seq/NOMe-seq (SNP/Methylation calling: BisSNP; HMM segmentation: DMNTools; Visualization/Clu…☆32Updated 3 years ago
- SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3☆38Updated 5 years ago
- single-nucleus nanopore reads processing pipeline☆15Updated last year
- ☆37Updated 5 years ago
- Nanopore 3' end-capture sequencing (Begik et al., bioRxiv 2021)☆12Updated last year
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆39Updated 3 years ago
- Identify and annotate TE-mediated insertions in long-read sequence data☆42Updated last week
- Annotation and segmentation of MAS-seq data☆20Updated 2 years ago
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆61Updated 8 months ago
- Deep learning model used to detect RNA m6a with read level based on the Nanopore direct RNA data.☆22Updated 2 years ago
- SingleCell Nanopore sequencing data analysis☆60Updated 3 weeks ago
- ☆23Updated 4 years ago
- Concurrent identification of m6A and m5C modifications in individual molecules from nanopore sequencing☆40Updated 11 months ago
- Prediction of RNA modifications and their stoichiometry from per-read features: current intensity, dwell time and trace (Begik*, Lucas* e…☆23Updated 2 years ago
- ScisorWiz: Differential Isoform Visualizer for Long-Read RNA Sequencing Data☆16Updated last year
- RNA modification detection using Nanopore raw reads with Deep One Class classification☆19Updated 4 years ago
- nanoNOMe (Nucleosome Occupancy and Methylome nanopore sequencing) Analysis☆18Updated 2 years ago
- single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…☆24Updated 11 months ago