☆13Dec 22, 2025Updated 2 months ago
Alternatives and similar repositories for restrander
Users that are interested in restrander are comparing it to the libraries listed below
Sorting:
- SeqWho - A reliable and rapid FASTQ(A) file classifier☆10Jan 21, 2022Updated 4 years ago
- Nanopanel2: a somatic variant caller for Nanopore panel sequencing data☆11Sep 21, 2021Updated 4 years ago
- Transposable element expression at unique loci in single cells with CELLO-seq☆11Jun 17, 2024Updated last year
- ChromoZoom is a fast, fluid web-based genome browser☆48Mar 15, 2021Updated 4 years ago
- Bulk (CP/GZ) and single-cell Iso-Seq in the developing human brain☆16May 30, 2024Updated last year
- single-cell analysis workflows for double phosphoramidite barcode and UMI Correction (scCOLOR-seq)☆13Jul 13, 2023Updated 2 years ago
- End-guided RNA assembler☆15Dec 2, 2025Updated 3 months ago
- Benchmarking variant calling in polyploids☆15Nov 26, 2021Updated 4 years ago
- Isoform co-usage networks from single-cell RNA-seq data☆16Feb 21, 2024Updated 2 years ago
- ☆16Apr 9, 2021Updated 4 years ago
- ORF Quantification pipeline for Alternative Splicing☆16May 11, 2021Updated 4 years ago
- Variant call adjudication☆16Jun 13, 2024Updated last year
- BAM CIGAR / MD transcoder for compact on-memory representation and quick drawing☆20Jul 19, 2023Updated 2 years ago
- code for 'Cell Types of Origin of the Cell Free Transcriptome' by Vorperian et al☆17Feb 22, 2022Updated 4 years ago
- MetaSNV, a metagenomic SNV calling pipeline.☆20Mar 25, 2022Updated 3 years ago
- Color DNA/RNA bases in terminal output☆21Aug 29, 2017Updated 8 years ago
- Paired REad TEXTure Mapper. Converts SAM formatted read pairs into genome contact maps.☆25Feb 11, 2026Updated 3 weeks ago
- CHM13 human reference genome issue tracking☆20Jan 18, 2024Updated 2 years ago
- This repository aims to serve as an index of the work described at Salmen & De Jonghe et. al 2022☆24Feb 21, 2022Updated 4 years ago
- TD2☆32Jan 14, 2026Updated last month
- ☆11Jul 3, 2022Updated 3 years ago
- ☆23Mar 29, 2023Updated 2 years ago
- ☆22Jul 30, 2025Updated 7 months ago
- Two pass alignment for long reads☆22Mar 9, 2021Updated 4 years ago
- Parallel implementation of OrthoMCL☆21Aug 26, 2022Updated 3 years ago
- Improving gene isoform quantification with miniQuant☆35Jan 13, 2026Updated last month
- The pipelines were built in the project resolving the genome of a diploid potato. Most of the scripts were sepcially designed to perform …☆23Jul 4, 2023Updated 2 years ago
- Toolkit for VNTR genotyping and repeat-pan genome graph construction☆31Aug 18, 2025Updated 6 months ago
- IsoTools is a python module for Long Read Transcriptome Sequencing (LRTS) analysis.☆27Oct 6, 2023Updated 2 years ago
- Annotation and segmentation of MAS-seq data☆20May 25, 2023Updated 2 years ago
- Structural Variants Assessment Based on Haplotype-resolved Assemblies☆21Apr 28, 2023Updated 2 years ago
- A method for measuring chromosome-specific telomere length from long reads☆22May 20, 2024Updated last year
- Convert HAL to VG☆23Aug 12, 2024Updated last year
- ☆27Feb 24, 2026Updated last week
- ☆27May 8, 2022Updated 3 years ago
- material related to the genetech courses☆10Sep 11, 2023Updated 2 years ago
- ☆30Jul 15, 2021Updated 4 years ago
- HiC-Hiker: A probabilistic model to determine contig orientation in chromosome-length scaffolds with Hi-C☆26Jan 14, 2021Updated 5 years ago
- Fishers Exact Test for Python (Cython)☆66Mar 20, 2025Updated 11 months ago