Alternatives and similar repositories for restrander

Users that are interested in restrander are comparing it to the libraries listed below

• nterhoeven / blast2bed
  convert a blast output to a bed file
  ☆12Updated 10 years ago
• lh3 / minigff
  Parsing and evaluating gene annotation and spliced alignment
  ☆27Updated 3 months ago
• Augroup / miniQuant
  Improving gene isoform quantification with miniQuant
  ☆29Updated last month
• zstephens / telogator
  A method for measuring chromosome-specific telomere length from long reads
  ☆22Updated last year
• Rosemeis / HaploNet
  Haplotype and population structure inference using neural networks.
  ☆27Updated 11 months ago
• YingZhou001 / Immuannot
  Immuological gene typing and annotation for genome assembly
  ☆38Updated 8 months ago
• mkirsche / Iris
  A module for improving the insertion sequences of structural variant calls
  ☆32Updated 4 years ago
• cmdoret / tinycov
  Command line tool to plot genomic coverage from a BAM file
  ☆14Updated 2 years ago
• SJTU-CGM / HUPAN
  Human pan-genome analysis pipeline
  ☆31Updated 5 years ago
• aakechin / cutPrimers
  curPrimers is a tool for trimming primer sequences from amplicon based NGS reads
  ☆16Updated 5 months ago
• human-pangenomics / hprc-tutorials
  ☆18Updated last year
• mikolmogorov / pbclip
  A simple tool to fix PacBio fasta/q that was not properly split into subreads
  ☆16Updated 4 years ago
• PacificBiosciences / pbipa
  Improved Phased Assembler
  ☆28Updated 3 years ago
• lh3 / etrf
  Exact Tandem Repeat Finder (not a TRF replacement)
  ☆50Updated 6 years ago
• tobiasrausch / lorax
  A long-read analysis toolbox for cancer and population genomics
  ☆23Updated 4 months ago
• maxfieldk / TE-Seq
  Snakemake pipeline to analyze transposable element 'omics data.
  ☆27Updated last week
• zhixingfeng / iGDA
  Detect and phase minor SNVs from long-read sequencing data
  ☆14Updated 3 years ago
• lh3 / panmask
  Easy genomic regions for short-read variant calling
  ☆45Updated 2 months ago
• skoren / triobinningScripts
  Scripts to reproduce TrioBinning manuscript
  ☆17Updated 5 years ago
• schatzlab / crossstitch
  Code for phasing SVs with SNPs
  ☆52Updated 5 years ago
• lorrainea / CNEFinder
  CNEFinder: Finding Conserved Non-coding Elements in Genomes
  ☆25Updated 4 years ago
• Xinglab / TideHunter
  TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain
  ☆21Updated last year
• jmonlong / sveval
  Functions to compare a SV call sets against a truth set.
  ☆30Updated 5 months ago
• kehrlab / PopDel
  Population-wide Deletion Calling
  ☆35Updated 7 months ago
• clemgoub / TypeTE
  Genotyping of segregating mobile elements insertions
  ☆19Updated 4 years ago
• cpockrandt / PhyloCSFpp
  PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…
  ☆30Updated 3 years ago
• ksahlin / ultra
  Long-read splice alignment with high accuracy
  ☆63Updated last year
• adamewing / tldr
  Identify and annotate TE-mediated insertions in long-read sequence data
  ☆46Updated 4 months ago
• marieBvr / TEs_genes_relationship_pipeline
  Distribution of TEs and their relationship to genes in host genome
  ☆23Updated 2 years ago
• oscarlr / MsPAC
  Phase reads, assemble haplotypes and detect SVs
  ☆19Updated 5 years ago