mritchielab / restranderLinks
☆10Updated 6 months ago
Alternatives and similar repositories for restrander
Users that are interested in restrander are comparing it to the libraries listed below
Sorting:
- convert a blast output to a bed file☆12Updated 10 years ago
- Parsing and evaluating gene annotation and spliced alignment☆27Updated 3 months ago
- Improving gene isoform quantification with miniQuant☆29Updated last month
- A method for measuring chromosome-specific telomere length from long reads☆22Updated last year
- Haplotype and population structure inference using neural networks.☆27Updated 11 months ago
- Immuological gene typing and annotation for genome assembly☆38Updated 8 months ago
- A module for improving the insertion sequences of structural variant calls☆32Updated 4 years ago
- Command line tool to plot genomic coverage from a BAM file☆14Updated 2 years ago
- Human pan-genome analysis pipeline☆31Updated 5 years ago
- curPrimers is a tool for trimming primer sequences from amplicon based NGS reads☆16Updated 5 months ago
- ☆18Updated last year
- A simple tool to fix PacBio fasta/q that was not properly split into subreads☆16Updated 4 years ago
- Improved Phased Assembler☆28Updated 3 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆50Updated 6 years ago
- A long-read analysis toolbox for cancer and population genomics☆23Updated 4 months ago
- Snakemake pipeline to analyze transposable element 'omics data.☆27Updated last week
- Detect and phase minor SNVs from long-read sequencing data☆14Updated 3 years ago
- Easy genomic regions for short-read variant calling☆45Updated 2 months ago
- Scripts to reproduce TrioBinning manuscript☆17Updated 5 years ago
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- CNEFinder: Finding Conserved Non-coding Elements in Genomes☆25Updated 4 years ago
- TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain☆21Updated last year
- Functions to compare a SV call sets against a truth set.☆30Updated 5 months ago
- Population-wide Deletion Calling☆35Updated 7 months ago
- Genotyping of segregating mobile elements insertions☆19Updated 4 years ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆30Updated 3 years ago
- Long-read splice alignment with high accuracy☆63Updated last year
- Identify and annotate TE-mediated insertions in long-read sequence data☆46Updated 4 months ago
- Distribution of TEs and their relationship to genes in host genome☆23Updated 2 years ago
- Phase reads, assemble haplotypes and detect SVs☆19Updated 5 years ago