epi2me-labs / wf-single-cell
☆79Updated 2 weeks ago
Alternatives and similar repositories for wf-single-cell:
Users that are interested in wf-single-cell are comparing it to the libraries listed below
- Single Cell Long Read is a suite of tools dedicated to Cell barcode / UMI assignment and analysis of highly multiplexed single cell Nanop…☆72Updated last year
- SNV calling from single cell sequencing☆88Updated 2 months ago
- Publication quality NGS track plotting☆109Updated 2 years ago
- mgatk: mitochondrial genome analysis toolkit☆104Updated 10 months ago
- Single cell Nanopore sequencing data for Genotype and Phenotype☆44Updated this week
- Full-length transcriptome splicing and mutation analysis☆76Updated 6 months ago
- Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)☆75Updated last year
- Tutorial Website☆55Updated 3 years ago
- Analysis pipeline for CUT&RUN and CUT&TAG experiments that includes QC, support for spike-ins, IgG controls, peak calling and downstream …☆87Updated 3 weeks ago
- Estimate locus specific human LINE-1 expression.☆32Updated 2 years ago
- Workflows for processing RNA data for germline short variant discovery with GATK v4 and related tools☆72Updated 3 years ago
- Code and analysis pipeline for Smart-seq3 (Hagemann-Jensen et al. 2020).☆50Updated 3 years ago
- Detection of m6A from direct RNA-Seq data☆113Updated 4 months ago
- Dynamics analysis of Alternative PolyAdenylation from RNA-seq☆54Updated last year
- SEACR: Sparse Enrichment Analysis for CUT&RUN☆106Updated 2 years ago
- release version☆50Updated 2 years ago
- Allele-specific alignment sorting☆54Updated 2 years ago
- Basic workflow for ATAC-seq analysis☆72Updated 10 months ago
- ☆116Updated last year
- ☆58Updated 5 months ago
- A quickstart tool for AmpliconArchitect. Performs all preliminary steps (alignment, CNV calling, seed interval detection) required prior …☆61Updated last month
- Tools to analyze Dip-C (or other 3C/Hi-C) data☆63Updated 2 months ago
- HiC uniform processing pipeline☆57Updated last year
- REDItools are python scripts to investigate RNA editing at genomic scale.☆62Updated 2 months ago
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆106Updated 2 weeks ago
- HMMRATAC peak caller for ATAC-seq data☆100Updated 2 months ago
- ☆71Updated 8 months ago
- A computation framework for genome-wide detection of enhancer-hijacking events from chromatin interaction data in re-arranged genomes☆59Updated last year
- Software for Quantifying Interspersed Repeat Expression☆53Updated 2 years ago
- Analysis pipeline for ATAC-seq Data☆60Updated 3 years ago