epi2me-labs / wf-single-cellLinks
☆104Updated last week
Alternatives and similar repositories for wf-single-cell
Users that are interested in wf-single-cell are comparing it to the libraries listed below
Sorting:
- Single Cell Long Read is a suite of tools dedicated to Cell barcode / UMI assignment and analysis of highly multiplexed single cell Nanop…☆78Updated 2 years ago
- SNV calling from single cell sequencing☆118Updated last year
- Full-length transcriptome splicing and mutation analysis☆86Updated last year
- SEACR: Sparse Enrichment Analysis for CUT&RUN☆120Updated 3 years ago
- release version☆58Updated 3 years ago
- Estimate locus specific human LINE-1 expression.☆39Updated 2 weeks ago
- Analysis pipeline for CUT&RUN and CUT&TAG experiments that includes QC, support for spike-ins, IgG controls, peak calling and downstream …☆107Updated 2 weeks ago
- Dynamics analysis of Alternative PolyAdenylation from RNA-seq☆63Updated 2 years ago
- Basic workflow for ATAC-seq analysis☆92Updated last year
- A quickstart tool for AmpliconArchitect. Enables all steps (alignment, CNV calling, seed interval detection) prior to running AmpliconArc…☆77Updated last week
- Publication quality NGS track plotting☆117Updated 3 months ago
- mgatk: mitochondrial genome analysis toolkit☆110Updated last year
- FAN-C: Framework for the ANalysis of C-like data☆121Updated last year
- Quantification of transposable element expression using RNA-seq☆81Updated last year
- REDItools are python scripts to investigate RNA editing at genomic scale.☆69Updated 6 months ago
- Links to ATAC-seq analysis tools☆77Updated 4 years ago
- Tools to analyze Dip-C (or other 3C/Hi-C) data☆74Updated last year
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆123Updated 2 months ago
- HMMRATAC peak caller for ATAC-seq data☆98Updated last year
- Tutorial Website☆63Updated 5 years ago
- Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)☆75Updated 2 years ago
- Efficient genotyping bi-allelic SNPs on single cells☆157Updated 3 months ago
- Check strandedness of RNA-Seq fastq files☆128Updated 3 years ago
- Single cell Nanopore sequencing data for Genotype and Phenotype☆57Updated 8 months ago
- ☆94Updated 6 months ago
- ☆64Updated 4 months ago
- A Perl/R pipeline for plotting metagenes☆37Updated 4 years ago
- A comprehensive toolkit for single-cell methylation sequencing data analysis☆31Updated this week
- A modular, containerized pipeline for ATAC-seq data processing☆61Updated 4 months ago
- Fit-Hi-C is a tool for assigning statistical confidence estimates to chromosomal contact maps produced by genome-wide genome architecture…☆92Updated 3 years ago