popgenmethods / SINGERLinks
Sampling and inference of genealogies with recombination
☆29Updated 8 months ago
Alternatives and similar repositories for SINGER
Users that are interested in SINGER are comparing it to the libraries listed below
Sorting:
- Framework for analyzing low depth NGS data in heterogeneous populations using PCA.☆51Updated 2 weeks ago
- ☆20Updated 8 months ago
- Software for ancestry estimation in unrelated individuals☆20Updated 3 weeks ago
- A genome-wide IM blockwise likelihood estimation toolkit☆16Updated 11 months ago
- Tools for inference of the DFE with dadi☆14Updated 4 years ago
- cobraa (coalescent based reconstruction of ancient admixture): a hidden Markov model to infer ghost admixture using just a diploid sequen…☆17Updated last week
- Code and binaries related to processing haplotagging data☆15Updated 3 years ago
- Assessing confidence in introgression among four populations☆27Updated 4 years ago
- predicting DFE and alpha from polymorphism data☆28Updated 6 years ago
- Graph-aware Retrieval of Selective Sweeps☆21Updated 8 months ago
- Fast and flexible inference of the distribution of fitness effects (DFE), VCF-SFS parsing with ancestral allele and site-degeneracy annot…☆16Updated last week
- Estimating repeat spectra and genome length from low-coverage genome skims☆11Updated last year
- machine learning applications for dadi☆15Updated 4 months ago
- Likelihood-based Selective Sweep Detection☆37Updated last year
- Tools and Utilities for msmc and msmc2☆47Updated last year
- The integrated Sequentially Markovian Coalescent☆13Updated last week
- ☆29Updated 2 years ago
- Scripts for reformatting data. Mainly from tab separated to an esoteric program specific format☆13Updated 3 months ago
- Infer demographic history with the Moran model☆47Updated 3 months ago
- Population genetics analyses from NGS data☆25Updated 4 years ago
- Bioinformatics pipeline to process whole genome resequencing data and perform genotype likelihood based population genomic analyses using…☆12Updated last month
- Leroy & Rougemont - “learning-by-doing” introduction to population genomics - scripts☆20Updated 5 years ago
- Genome-wide scan for balancing selection using beta statistic☆29Updated 2 years ago
- Analyze and simulate Pool-Seq time series data☆15Updated 2 years ago
- LDna: an R package to perform linkage disequilibrium network analysis☆31Updated last year
- ☆13Updated 4 years ago
- heterozygosity-based estimator of Rho - https://academic.oup.com/genetics/advance-article/doi/10.1093/genetics/iyac100/6623412☆10Updated last year
- ksrates is a tool to position whole-genome duplications relative to speciation events using substitution-rate-adjusted mixed paralog-orth…☆19Updated 2 weeks ago
- Software for detecting introgression using supervised machine learning☆21Updated 2 years ago
- ☆23Updated last year