popgenmethods / SINGERLinks
Sampling and inference of genealogies with recombination
☆30Updated last week
Alternatives and similar repositories for SINGER
Users that are interested in SINGER are comparing it to the libraries listed below
Sorting:
- Framework for analyzing low depth NGS data in heterogeneous populations using PCA.☆51Updated last month
- Software for ancestry estimation in unrelated individuals☆20Updated 2 weeks ago
- Assessing confidence in introgression among four populations☆27Updated 4 years ago
- ☆20Updated 8 months ago
- predicting DFE and alpha from polymorphism data☆28Updated 6 years ago
- Graph-aware Retrieval of Selective Sweeps☆21Updated 9 months ago
- Likelihood-based Selective Sweep Detection☆38Updated last year
- Tools and Utilities for msmc and msmc2☆47Updated last year
- ☆30Updated 2 years ago
- Population genetics analyses from NGS data☆25Updated 4 years ago
- Code and binaries related to processing haplotagging data☆15Updated 3 years ago
- A genome-wide IM blockwise likelihood estimation toolkit☆16Updated last year
- Infer demographic history with the Moran model☆47Updated last week
- Tools for inference of the DFE with dadi☆14Updated 4 years ago
- Fast and flexible inference of the distribution of fitness effects (DFE), VCF-SFS parsing with ancestral allele and site-degeneracy annot…☆17Updated 3 weeks ago
- Software for detecting introgression using supervised machine learning☆21Updated 2 years ago
- Leroy & Rougemont - “learning-by-doing” introduction to population genomics - scripts☆20Updated 5 years ago
- LDna: an R package to perform linkage disequilibrium network analysis☆31Updated last year
- machine learning applications for dadi☆15Updated 5 months ago
- R Package to Estimate Variable Recombination Rates using Population Genetic Data☆42Updated 5 years ago
- Scripts for reformatting data. Mainly from tab separated to an esoteric program specific format☆13Updated 4 months ago
- Analysis of genotyping and next-generation sequencing data in medical and population genetics☆23Updated 2 years ago
- Bioinformatics pipeline to process whole genome resequencing data and perform genotype likelihood based population genomic analyses using…☆14Updated 3 weeks ago
- The integrated Sequentially Markovian Coalescent☆14Updated 3 weeks ago
- R functions for generating site frequency spectra (SFS) from a VCF file.☆27Updated 5 years ago
- Estimating repeat spectra and genome length from low-coverage genome skims☆11Updated last year
- A statistical framework for reference-free inference of archaic local ancestry☆16Updated 5 years ago
- wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication☆34Updated 4 months ago
- Distinguishing among modes of convergent adaptation using population genomic data: statistical inference method, extensions, and examples☆13Updated 6 years ago
- ksrates is a tool to position whole-genome duplications relative to speciation events using substitution-rate-adjusted mixed paralog-orth…☆19Updated last month