molpopgen / fwdpyLinks
forward-time population genetic simulation in python
☆18Updated 8 years ago
Alternatives and similar repositories for fwdpy
Users that are interested in fwdpy are comparing it to the libraries listed below
Sorting:
- chitin: an awful shell for awful bioinformaticians☆61Updated 5 years ago
- fwdpp is a C++ template library for implementing efficient forward-time population genetic simulations☆27Updated 4 years ago
- ☆68Updated 2 years ago
- a wee tool for random access into BGZF files.☆86Updated 7 years ago
- Automatically exported from code.google.com/p/macs☆17Updated 6 years ago
- Response to blog post about Salmon☆37Updated 8 years ago
- Documentation of the Snakemake-Profiles project.☆55Updated 3 years ago
- Sampling and manipulating genome-wide ancestral recombination graphs (ARGs)☆58Updated 10 years ago
- A fast Python library for VCF files leveraging Cython for speed.☆52Updated 7 years ago
- Standalone C library for assembling Illumina short reads in small regions☆72Updated 3 years ago
- A collection of well-known bioinformatics programs.☆25Updated 10 years ago
- ☆73Updated 6 years ago
- ☆36Updated 5 years ago
- JHU EN.600.649: Computational Genomics: Applied Comparative Genomics☆58Updated 7 years ago
- Fast calculations of linkage-disequilibrium in large-scale human cohorts☆44Updated 6 years ago
- (DEPRECATED) epic: diffuse domain ChIP-Seq caller based on SICER☆31Updated 7 years ago
- Genome guided re-segmention and visualization for raw nanopore sequencing data.☆47Updated 7 years ago
- Parallel merging, squaring off and ensemble calling for genomic variants☆20Updated 6 years ago
- Rapid sensitive and accurate read mapping via quasi-mapping☆90Updated 5 years ago
- Snakemake library for bioinformatics programs, with a focus on next-generation sequencing☆22Updated 9 years ago
- Using kallisto for metagenomic analysis☆49Updated 9 years ago
- A genotype query interface.☆136Updated 4 years ago
- Experimental pipeline for correcting nanopore reads☆39Updated 8 years ago
- pythonic wrapper for libhts (moved to: https://github.com/quinlan-lab/hts-python)☆49Updated 8 years ago
- Estimating k-mer coverage histogram of genomics data☆77Updated 2 years ago
- ☆45Updated 9 years ago
- ☆43Updated 9 years ago
- Analysis toolkit and programming library for k-mer profiles☆31Updated 4 years ago
- Tools for analyzing 10X Genomics data☆42Updated 6 years ago
- Retrieve data in genomic intervals with a Python interface for tabix.☆82Updated 8 years ago