forward-time population genetic simulation in python
☆18Mar 19, 2017Updated 9 years ago
Alternatives and similar repositories for fwdpy
Users that are interested in fwdpy are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- fwdpp is a C++ template library for implementing efficient forward-time population genetic simulations☆28Oct 7, 2021Updated 4 years ago
- ☆15Jul 17, 2019Updated 7 years ago
- A toolbox for C++ devs wanting to build geospatial population genetics simulators !☆11May 4, 2025Updated last year
- Repo to analyze population genetic data with many different methods☆15Oct 23, 2019Updated 6 years ago
- Simple examples of Monte Carlo and MCMC☆20May 14, 2014Updated 12 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Simulate ARGs and genomic sequence data using population genetic models☆217Updated this week
- Process MS results in R, in a tidy way☆16May 25, 2018Updated 8 years ago
- R code to compute the Singleton Density Score (SDS)☆31Sep 19, 2016Updated 9 years ago
- A general-purpose forward-time population genetics simulation environment.☆37Feb 4, 2026Updated 6 months ago
- LaTeX thesis tips☆37Jan 27, 2020Updated 6 years ago
- libsequence: a C++ class library for evolutionary genetic analysis☆54Jul 3, 2020Updated 6 years ago
- Liability Estimation for Case-Control Studies☆10Sep 26, 2020Updated 5 years ago
- Fast, whole-genome simulation of the discrete time Wright-Fisher process☆15Apr 6, 2020Updated 6 years ago
- FermiKit small variant calls for public SGDP samples☆17Sep 22, 2016Updated 9 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- List of links to lists of links to conference slides☆11Jan 17, 2019Updated 7 years ago
- A series of scripts to automate sequence workflows☆18Jul 16, 2026Updated 3 weeks ago
- Code to do data processing and create figures for "The geography of recent genetic ancestry across Europe", http://arxiv.org/abs/1207.381…☆15May 26, 2014Updated 12 years ago
- An analysis of Arabidopsis RNA-seq data (hy5 mutant and wt, two replicates each; SRA accession SRX029582)☆16Jul 3, 2012Updated 14 years ago
- Snakemake based pipeline for RNA-Seq analysis☆31Jun 26, 2019Updated 7 years ago
- Quantitative Trait Cluster Association Test in R☆26Apr 19, 2021Updated 5 years ago
- Best practices for applying machine learning to bacterial 16S rRNA gene sequencing data☆31Jun 10, 2020Updated 6 years ago
- A collection of papers and books that Storey Lab members should read and others may find useful☆49Oct 19, 2015Updated 10 years ago
- Sweep Inference Framework (controlling for correlation)☆29Jul 10, 2024Updated 2 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- R Package for performing Qst-Fst analyses☆21Nov 14, 2017Updated 8 years ago
- FFPopSim is a collection of C++ classes and a Python interface for efficient simulation of large populations, in particular when the prod…☆14Oct 14, 2025Updated 9 months ago
- Sampling and manipulating genome-wide ancestral recombination graphs (ARGs)☆59Aug 9, 2015Updated 11 years ago
- chitin: an awful shell for awful bioinformaticians☆60Mar 25, 2020Updated 6 years ago
- ☆24Jun 9, 2017Updated 9 years ago
- Galaxy Docker Image with Tools for Genome Annotation☆12Apr 20, 2021Updated 5 years ago
- EPSAPG: An Extensive Protein Sequence Alignment Profiles Generator Pipeline Combining MMseqs2 and PSI-BLAST☆11Apr 4, 2024Updated 2 years ago
- Tools for generating and decoding error-correcting DNA barcodes☆15Feb 15, 2022Updated 4 years ago
- use paired-end transcriptome reads to scaffold genomes☆12May 30, 2019Updated 7 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Naive PCA for genotype data☆10Jul 27, 2016Updated 10 years ago
- An application to remove PCR duplicates from high throughput sequencing runs.☆11Apr 22, 2018Updated 8 years ago
- ☆16Jun 7, 2023Updated 3 years ago
- 16S pipeline using qiime2 created with snakemake☆12Aug 6, 2026Updated last week
- Code for preparing and running the imageCCA method.☆20Aug 2, 2017Updated 9 years ago
- Simple and flexible manipulation of genomic data.☆16Apr 16, 2025Updated last year
- PgRC: Pseudogenome based Read Compressor☆14Nov 20, 2024Updated last year