molpopgen / fwdpy
forward-time population genetic simulation in python
☆18Updated 8 years ago
Alternatives and similar repositories for fwdpy:
Users that are interested in fwdpy are comparing it to the libraries listed below
- Load numpy arrays and HDF5 files from VCF (variant call format)☆31Updated 7 years ago
- Snakemake library for bioinformatics programs, with a focus on next-generation sequencing☆22Updated 9 years ago
- Small general purpose library for C and Python with focus on bioinformatics.☆30Updated 2 years ago
- a wee tool for random access into BGZF files.☆84Updated 6 years ago
- Fast, whole-genome simulation of the discrete time Wright-Fisher process☆16Updated 5 years ago
- FFPopSim is a collection of C++ classes and a Python interface for efficient simulation of large populations, in particular when the prod…☆14Updated last year
- ☆30Updated 8 years ago
- ☆68Updated last year
- Color DNA/RNA bases in terminal output☆21Updated 7 years ago
- Automatically exported from code.google.com/p/macs☆16Updated 5 years ago
- Fast calculations of linkage-disequilibrium in large-scale human cohorts☆43Updated 5 years ago
- Visualise interstrain recombination from environmental samples.☆26Updated 6 years ago
- fwdpp is a C++ template library for implementing efficient forward-time population genetic simulations☆27Updated 3 years ago
- Classify sequencing reads using MinHash.☆48Updated 5 years ago
- A fast Python library for VCF files leveraging Cython for speed.☆52Updated 7 years ago
- Standalone C library for assembling Illumina short reads in small regions☆72Updated 2 years ago
- Homebrew formulae for bioinformatics software only available for Linux☆27Updated 5 years ago
- Parallel merging, squaring off and ensemble calling for genomic variants☆20Updated 5 years ago
- Rapid and robust analysis of RNA-Seq experiments.☆32Updated 9 years ago
- Forward-time simulation in Python using fwdpp☆30Updated last week
- An integrated high performance bioinformatics toolkit☆23Updated 6 years ago
- ☆37Updated 4 years ago
- Tandem Repeat Annotation Library☆25Updated 2 years ago
- Work for the tree sequence inference paper.☆23Updated 4 years ago
- conda recipes for genomic data☆85Updated 3 years ago
- Library of snakemake rules.☆12Updated 6 years ago
- Cosmo is a fast, low-memory DNA assembler using a Succinct (variable order) de Bruijn Graph.☆51Updated last year
- R markdown file to extract list of collaborators and affiliations from pubmed for NSF biosketch☆38Updated 7 years ago
- A toolkit for annotation of transposable element families from unassembled sequence reads☆30Updated 2 years ago
- Kinship (genetic relatedness) using GBS (genotyping-by-sequencing) with Depth adjustment☆21Updated last month