A set of tools for modelling ancestry patterns along the genome.
☆24Apr 10, 2026Updated this week
Alternatives and similar repositories for tracts
Users that are interested in tracts are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A tool for estimating time-dependent migration rates based on cross-/within-population coalescent rates from MSMC☆16Apr 6, 2025Updated last year
- ☆15Nov 22, 2022Updated 3 years ago
- Provides helper scripts for inferring local ancestry, performing ancestry-specific PCA, etc☆116Sep 13, 2021Updated 4 years ago
- Distinguishing among modes of convergent adaptation using population genomic data: statistical inference method, extensions, and examples☆13May 1, 2019Updated 6 years ago
- Tools for describing and manipulating demographic models.☆19Mar 30, 2026Updated 2 weeks ago
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆15Mar 30, 2026Updated 2 weeks ago
- GWAS QC, PCA, haplotype phasing, genotype imputation☆20Mar 31, 2026Updated 2 weeks ago
- Post variant-calling QC pipeline for orienting cohort data with a reference file. Additional steps for merging and phasing with a referen…☆11Jun 10, 2019Updated 6 years ago
- ABLE - Approximate Blockwise Likelihood Estimation☆17Jul 4, 2018Updated 7 years ago
- PSMC-based Migration and Split Time Inference (MiSTI) from two genomes☆12Mar 20, 2026Updated 3 weeks ago
- Implementation of a polymorphism aware phylogenetic model using HYPHY☆19Jan 14, 2022Updated 4 years ago
- Fast analysis and visualization of latent clusters in population genetic data☆78Mar 29, 2022Updated 4 years ago
- ☆16Feb 26, 2026Updated last month
- ☆21Oct 2, 2024Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Automatically exported from code.google.com/p/malder☆11Mar 17, 2015Updated 11 years ago
- Interactive demonstration of how to use PCA, t-SNE, and UMAP on genotype data from the Thousand Genome Project.☆20Oct 25, 2020Updated 5 years ago
- machine learning applications for dadi☆17Jan 23, 2025Updated last year
- Sweep Inference Framework (controlling for correlation)☆28Jul 10, 2024Updated last year
- R Functions to calculate power of GWAS studies for a single associated SNP, under various parameters. Suitable for classical (i.e. single…☆22Jul 19, 2018Updated 7 years ago
- Module for analysing admixture graphs☆28Apr 30, 2018Updated 7 years ago
- CoMorMent-Containers☆36Feb 23, 2026Updated last month
- ☆53Jul 9, 2025Updated 9 months ago
- Consensus calling (or "reference assisted assembly"), chiefly of ancient mitochondria☆19Jul 29, 2013Updated 12 years ago
- Deploy open-source AI quickly and easily - Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Program to simulate admixture between multiple populations☆19Mar 8, 2023Updated 3 years ago
- ☆13Aug 18, 2023Updated 2 years ago
- A python framework for inferring demography from tracts of identity by state as reported in PLoS Genetics by Harris and Nielsen (2013)☆15Aug 1, 2013Updated 12 years ago
- faster haplotype-based admixture inference and dating software☆10Nov 25, 2025Updated 4 months ago
- Analyze and simulate Pool-Seq time series data☆17Jun 16, 2022Updated 3 years ago
- Simulate ARGs and genomic sequence data using population genetic models☆210Updated this week
- metagenome population recombination rate estimation pipeline☆12Nov 23, 2025Updated 4 months ago
- ☆24Nov 27, 2024Updated last year
- Efficient program for calculating Extended Haplotype Homozygosity (EHH) and Integrated Haplotype Score (iHS)☆45Oct 24, 2019Updated 6 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- The SPrime program identifies variants that are introgressed from archaic populations.☆27May 21, 2022Updated 3 years ago
- ☆13Jun 17, 2021Updated 4 years ago
- A Framework for Coalescent Simulation in R☆24Mar 20, 2024Updated 2 years ago
- ☆34Nov 11, 2025Updated 5 months ago
- Scripts for implementing the Tractor pipeline☆55Sep 4, 2025Updated 7 months ago
- Calculates the probability of a haplotype given a population reference panel☆12Dec 9, 2024Updated last year
- ☆36Dec 19, 2023Updated 2 years ago