Alternatives and similar repositories for relate

Users that are interested in relate are comparing it to the libraries listed below

• popgenmethods / SINGER
  Sampling and inference of genealogies with recombination
  ☆50Updated 7 months ago
• Rosemeis / pcangsd
  Framework for analyzing low depth NGS data in heterogeneous populations using PCA.
  ☆58Updated 7 months ago
• schneebergerlab / findGSE
  findGSE is a tool for estimating size of (heterozygous diploid or homozygous) genomes by fitting k-mer frequencies iteratively with a ske…
  ☆38Updated 2 years ago
• JiscaH / sequoia
  R package for pedigree inference based on SNP data
  ☆28Updated last month
• PhHermann / LDJump
  R Package to Estimate Variable Recombination Rates using Population Genetic Data
  ☆44Updated 6 years ago
• russcd / Ancestry_HMM
  ☆32Updated 3 years ago
• kholsinger / Lecture-Notes-in-Population-Genetics
  LaTeX and associated files for lecture notes used in EEB 5348 at the University of Connecticut
  ☆36Updated 2 years ago
• popgenmethods / momi2
  Infer demographic history with the Moran model
  ☆51Updated 7 months ago
• tpook92 / HaploBlocker
  R-package: Calculation of haplotype blocks and libraries
  ☆35Updated 6 months ago
• stschiff / msmc-tools
  Tools and Utilities for msmc and msmc2
  ☆50Updated 2 weeks ago
• esrud / GONE
  GONE: Scripts, programs and an example data set
  ☆51Updated 6 months ago
• haplotype / ELAI
  Efficient Local Ancestry Inference
  ☆17Updated 3 months ago
• stschiff / msmc2
  ☆66Updated 3 years ago
• paula-tataru / polyDFE
  predicting DFE and alpha from polymorphism data
  ☆28Updated 7 years ago
• rderelle / Broccoli
  orthology assignment using phylogenetic and network analyses
  ☆53Updated 3 weeks ago
• kr-colab / discoal
  discoal is a coalescent simulation program capable of simulating models with recombination, selective sweeps, and demographic changes inc…
  ☆49Updated last week
• hahnlab / CAGEE
  Computational Analysis of Gene Expression Evolution
  ☆45Updated 5 months ago
• evotools / hapbin
  Efficient program for calculating Extended Haplotype Homozygosity (EHH) and Integrated Haplotype Score (iHS)
  ☆45Updated 6 years ago
• fgvieira / ngsLD
  Calculation of pairwise Linkage Disequilibrium (LD) under a probabilistic framework
  ☆47Updated 2 years ago
• petrikemppainen / LDna
  LDna: an R package to perform linkage disequilibrium network analysis
  ☆31Updated last year
• mmatschiner / F4
  Assessing confidence in introgression among four populations
  ☆28Updated 4 years ago
• FerRacimo / GRoSS
  Graph-aware Retrieval of Selective Sweeps
  ☆22Updated last year
• santiagosnchez / vcf2fasta
  Converts a VCF file to a FASTA alignment provided a reference genome and a GFF file
  ☆53Updated last month
• kr-colab / diploSHIC
  feature-based deep learning for the identification of selective sweeps
  ☆57Updated this week
• johnssproul / RepeatProfiler
  ☆27Updated 11 months ago
• clwgg / nQuire
  A statistical framework for ploidy estimation using NGS short-read data
  ☆62Updated 7 years ago
• mfumagalli / ngsPopGen
  Population genetics analyses from NGS data
  ☆26Updated 4 years ago
• tulerpetontidae / psmc-python
  A reimplementation of a classical PSMC method in python for educational purposes
  ☆17Updated last year
• alachins / raisd
  RAiSD: software to detect positive selection based on multiple signatures of a selective sweep and SNP vectors
  ☆37Updated 2 years ago
• auton1 / LDhat
  Estimate recombination rates from population genetic data
  ☆71Updated 5 years ago