MyersGroup / relateLinks
Software for estimating genome-wide genealogies for thousands of samples
☆39Updated last month
Alternatives and similar repositories for relate
Users that are interested in relate are comparing it to the libraries listed below
Sorting:
- Sampling and inference of genealogies with recombination☆47Updated 5 months ago
- orthology assignment using phylogenetic and network analyses☆51Updated last month
- PREQUAL: a pre-alignment quality filter for comparative sequence analyses☆32Updated 3 years ago
- Framework for analyzing low depth NGS data in heterogeneous populations using PCA.☆56Updated 5 months ago
- findGSE is a tool for estimating size of (heterozygous diploid or homozygous) genomes by fitting k-mer frequencies iteratively with a ske…☆38Updated last year
- R-package: Calculation of haplotype blocks and libraries☆35Updated 4 months ago
- HyPhy standalone analyses☆49Updated 3 months ago
- ☆26Updated 9 months ago
- Infer demographic history with the Moran model☆50Updated 6 months ago
- Assessing confidence in introgression among four populations☆27Updated 4 years ago
- EnTAP is moving to GitLab for future changes https://gitlab.com/PlantGenomicsLab/EnTAP☆41Updated 10 months ago
- ☆65Updated 3 years ago
- predicting DFE and alpha from polymorphism data☆28Updated 7 years ago
- RAiSD: software to detect positive selection based on multiple signatures of a selective sweep and SNP vectors☆36Updated 2 years ago
- Bayesian molecular clock dating tutorial with genome-scale datasets☆19Updated 4 years ago
- Tools and Utilities for msmc and msmc2☆49Updated 4 months ago
- Toolkit for Population Genetic Statistics from Pool-Sequenced Samples, e.g., in Evolve and Resequence experiments☆47Updated 2 months ago
- Software for ancestry estimation in unrelated individuals☆21Updated last week
- Software for detecting introgression using supervised machine learning☆21Updated 3 years ago
- wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication☆37Updated 10 months ago
- Compute N50/NG50 and auN/auNG☆33Updated 2 years ago
- Likelihood-based Selective Sweep Detection☆40Updated 2 years ago
- GONE: Scripts, programs and an example data set☆48Updated 4 months ago
- Red: an intelligent, rapid, accurate tool for detecting repeats de-novo on the genomic scale.☆18Updated last year
- Calculation of pairwise Linkage Disequilibrium (LD) under a probabilistic framework☆47Updated 2 years ago
- Alignment-based retrieval and concatenation of phylogenetic markers from whole genome sequence (WGS) data☆36Updated last year
- GitHub repository for GenErode, a Snakemake workflow for the analysis of whole-genome sequencing data from historical and modern samples …☆28Updated last week
- A high performance tool to identify orthologs and paralogs across genomes.☆27Updated 2 years ago
- A comparative genomics workflow using Nextflow, conda, Julia and R☆49Updated last year
- MCMCtreeR: A package to estimate distribution values for temporal node constraints and prepare input files for MCMCtree☆45Updated 6 years ago