☆29Feb 5, 2021Updated 5 years ago
Alternatives and similar repositories for nanopore-methylation-utilities
Users that are interested in nanopore-methylation-utilities are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- nanoNOMe (Nucleosome Occupancy and Methylome nanopore sequencing) Analysis☆20Nov 18, 2022Updated 3 years ago
- Automatic DNA methylation detection from nanopore tools and their consensus model☆79May 22, 2023Updated 2 years ago
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆34Feb 25, 2021Updated 5 years ago
- GpC methylation from fast5:s to reference anchored calls☆10Nov 18, 2020Updated 5 years ago
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆30Jul 3, 2023Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- Filter fasta/fastq(.gz) files by ID and/or sequence length☆15Feb 8, 2020Updated 6 years ago
- ☆33Updated this week
- scripts for analysis associated with Cas9Enrichment publication☆12Feb 10, 2020Updated 6 years ago
- Plotting tools for nanopore methylation data☆95Jul 28, 2025Updated 8 months ago
- Snakemake pipelines for nanopore sequencing data archiving and processing☆91Feb 2, 2022Updated 4 years ago
- Methylation Phasing for Nanopore Sequencing☆49Mar 5, 2023Updated 3 years ago
- DeepMP is a computational tool to detect DNA modifications in Nanopore sequencing data☆27Mar 18, 2022Updated 4 years ago
- Ultra-fast methylation calling and event alignment tool for nanopore sequencing data (supports CUDA acceleration)☆163Mar 19, 2026Updated last week
- 🪡Correct and scaffold assemblies using long reads☆57Mar 10, 2026Updated 2 weeks ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Detect key Units in mosaic Tandem Repeats from representative reads from the same locus☆10Aug 2, 2023Updated 2 years ago
- Detecting methylation using signal-level features from Nanopore sequencing reads☆118Jun 4, 2023Updated 2 years ago
- ☆11Jul 3, 2022Updated 3 years ago
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆35Feb 27, 2024Updated 2 years ago
- nanodisco: a toolbox for discovering and exploiting multiple types of DNA methylation from individual bacteria and microbiomes using nano…☆74May 20, 2022Updated 3 years ago
- Kmer based genotyper for short reads.☆23Oct 19, 2021Updated 4 years ago
- ☆10Jan 24, 2023Updated 3 years ago
- Methylmap is a tool for visualization of modified nucleotide frequencies for large cohort sizes.☆22Jan 23, 2026Updated 2 months ago
- Scripts to reproduce TrioBinning manuscript☆17Mar 31, 2020Updated 5 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆16Jan 10, 2022Updated 4 years ago
- ☆84Mar 3, 2025Updated last year
- Nanopore raw signal repeat detection pipeline☆45Mar 17, 2023Updated 3 years ago
- Method to optimally select samples for validation and resequencing☆30Apr 6, 2021Updated 4 years ago
- SV genotyping with long reads☆40Jul 3, 2023Updated 2 years ago
- ☆15Aug 22, 2023Updated 2 years ago
- Structural variant caller☆55Dec 8, 2021Updated 4 years ago
- Megalodon is a research command line tool to extract high accuracy modified base and sequence variant calls from raw nanopore reads by a…☆204May 4, 2023Updated 2 years ago
- An accurate and ultra-fast hybrid genome assembler☆87Apr 10, 2024Updated last year
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Streaming assembly for MinION data☆25Dec 16, 2023Updated 2 years ago
- Clair: Exploring the limit of using deep neural network on pileup data for germline variant calling☆105Sep 1, 2022Updated 3 years ago
- Swipe your Structural Variants called on long (ONT/PacBio) reads with short exact (Illumina) reads.☆32Sep 19, 2022Updated 3 years ago
- Automation of pipelines that depend on preexisting assembly, polishing, and alignment tools. Performance evaluation and visualization of …☆13May 29, 2020Updated 5 years ago
- NANOME pipeline (Nanopore long-read sequencing consensus DNA methylation detection method and pipeline)☆34Mar 13, 2026Updated 2 weeks ago
- Characterization of Structural Variation in Chinese samples☆18Dec 22, 2021Updated 4 years ago
- ☆46Jul 6, 2017Updated 8 years ago