NANOME pipeline (Nanopore long-read sequencing consensus DNA methylation detection method and pipeline)
☆34Mar 13, 2026Updated 2 months ago
Alternatives and similar repositories for nanome
Users that are interested in nanome are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- DeepMP is a computational tool to detect DNA modifications in Nanopore sequencing data☆27Mar 18, 2022Updated 4 years ago
- An integrated computational framework for comprehensive transcriptome analyses with Nanopore direct-RNA sequencing data☆15May 17, 2025Updated last year
- ☆29Oct 17, 2023Updated 2 years ago
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆30Jul 3, 2023Updated 2 years ago
- ☆35Aug 18, 2024Updated last year
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- A snakemake pipeline to assembly, polishing, correction and quality check from Oxford nanopore reads.☆36Apr 4, 2025Updated last year
- ☆36Mar 31, 2026Updated last month
- Automatic DNA methylation detection from nanopore tools and their consensus model☆79May 22, 2023Updated 3 years ago
- Detecting methylation using signal-level features from Nanopore sequencing reads of plants☆66Apr 30, 2026Updated 3 weeks ago
- Gene model transfer from closely related reference genomes using cDNA alignments☆10Aug 27, 2020Updated 5 years ago
- Methylmap is a tool for visualization of modified nucleotide frequencies for large cohort sizes.☆23Jan 23, 2026Updated 3 months ago
- Detecting methylation using signal-level features from Nanopore sequencing reads☆118Jun 4, 2023Updated 2 years ago
- Realtime base modification frequency tool☆13Sep 16, 2025Updated 8 months ago
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆34Feb 25, 2021Updated 5 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- modPhred is a pipeline for detection of DNA/RNA modifications from raw ONT data☆16Apr 29, 2024Updated 2 years ago
- ☆84Mar 3, 2025Updated last year
- NanoMod: a computational tool to detect DNA modifications using Nanopore long-read sequencing data☆38Feb 2, 2022Updated 4 years ago
- nanoNOMe (Nucleosome Occupancy and Methylome nanopore sequencing) Analysis☆20Nov 18, 2022Updated 3 years ago
- Automated Detection and Qualification of Differential Methylation☆16Nov 21, 2023Updated 2 years ago
- Combine structural variation outputs from long sequencing reads into a superior call set☆18Aug 6, 2025Updated 9 months ago
- Very simple and configurable all-in-one dotplot program☆14Apr 1, 2023Updated 3 years ago
- Methylation/modified base calling separated from basecalling.☆187Sep 17, 2024Updated last year
- Plotting tools for nanopore methylation data☆95Jul 28, 2025Updated 9 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Megalodon is a research command line tool to extract high accuracy modified base and sequence variant calls from raw nanopore reads by a…☆204May 4, 2023Updated 3 years ago
- Experimental String Graph construction and processing☆26Aug 14, 2023Updated 2 years ago
- ☆30Feb 5, 2021Updated 5 years ago
- Viola is a flexible and powerful python package designed specifically for analysis of genomic structural variant (SV) signatures.☆28Jul 26, 2024Updated last year
- A python wrapper around SURVIVOR☆20Feb 15, 2024Updated 2 years ago
- A package to run real time analysis of nanopore methylation data.☆23May 11, 2026Updated last week
- ☆17Jan 15, 2025Updated last year
- Set of tools to manipulate and visualize modified base bam files☆61Aug 2, 2022Updated 3 years ago
- A snakemake pipeline for SV analysis from nanopore genome sequencing☆52Feb 24, 2020Updated 6 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- A collection of CSV/TSV Utilities☆13Jun 2, 2020Updated 5 years ago
- ☆33Nov 6, 2022Updated 3 years ago
- SV genotyping with long reads☆40Jul 3, 2023Updated 2 years ago
- MethPhaser: methylation-based haplotype phasing of human genomes☆55Mar 5, 2025Updated last year
- ☆10Mar 11, 2025Updated last year
- GBWT-based handle graph☆33Updated this week
- DeepMod: a deep-learning tool for genomic-scale, strand-sensitive and single-nucleotide based detection of DNA modifications☆105Mar 8, 2023Updated 3 years ago