giesselmann / nanopypeLinks
Snakemake pipelines for nanopore sequencing data archiving and processing
☆90Updated 3 years ago
Alternatives and similar repositories for nanopype
Users that are interested in nanopype are comparing it to the libraries listed below
Sorting:
- Lima - Demultiplex Barcoded PacBio Samples☆67Updated 3 weeks ago
- ☆39Updated 3 weeks ago
- Wally: Visualization of aligned sequencing reads and contigs☆117Updated last month
- Same species annotation lift over pipeline.☆97Updated last year
- BAM Statistics, Feature Counting and Annotation☆150Updated 3 months ago
- ☆48Updated 9 months ago
- Dfam Transposable Element Tools Docker container.☆91Updated last month
- A tool to identify, orient, trim and rescue full length cDNA reads☆82Updated 2 years ago
- Tools for working with second gen assemblies, fasta sequences, etc☆93Updated 8 years ago
- SV caller for nanopore data☆91Updated 4 years ago
- Fast and accurate coordinate conversion between assemblies☆113Updated 2 months ago
- Simple pileup-based variant caller☆90Updated last month
- Tools to annotate genomes using long read transcriptomics data☆45Updated 4 years ago
- Variant Calling Pipeline Using GATK4 and Nextflow☆55Updated 2 years ago
- Error correction of ONT transcript reads☆58Updated last year
- 🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies☆95Updated 3 months ago
- LRSDAY: Long-read Sequencing Data Analysis for Yeasts☆31Updated last year
- ☆78Updated 4 years ago
- Nextflow pipeline for analysis of direct RNA Nanopore reads☆102Updated last month
- Tip and tricks for BAM files☆85Updated 6 years ago
- List of genome assembly tools☆65Updated this week
- web documentation for Trinotate☆48Updated 2 years ago
- Methylation Phasing for Nanopore Sequencing☆48Updated 2 years ago
- Software for clustering de novo assembled transcripts and counting overlapping reads☆71Updated 3 years ago
- PHAST☆73Updated last week
- A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)☆140Updated this week
- Dotplot large Genomes in an Interactive, Efficient and Simple way☆103Updated 4 months ago
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆51Updated 4 years ago
- A local-haplotagging-based small and structural variant caller☆78Updated 3 weeks ago
- Research release basecalling models and configurations☆110Updated 2 weeks ago