DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets
☆33Feb 25, 2021Updated 5 years ago
Alternatives and similar repositories for pycoMeth
Users that are interested in pycoMeth are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆31Jul 3, 2023Updated 3 years ago
- Plotting tools for nanopore methylation data☆96Oct 19, 2026Updated last week
- Detecting methylation using signal-level features from Nanopore sequencing reads☆118Jun 4, 2023Updated 3 years ago
- Extract modifed base call information from Guppy Fast5 files.☆14Mar 28, 2022Updated 4 years ago
- Megalodon is a research command line tool to extract high accuracy modified base and sequence variant calls from raw nanopore reads by a…☆204May 4, 2023Updated 3 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- ☆31Feb 5, 2021Updated 5 years ago
- Ultra-fast methylation calling and event alignment tool for nanopore sequencing data (supports CUDA acceleration)☆166Aug 21, 2026Updated 2 months ago
- Research release basecalling models and configurations☆121Sep 7, 2026Updated last month
- DeepMP is a computational tool to detect DNA modifications in Nanopore sequencing data☆26Mar 18, 2022Updated 4 years ago
- Methylation Phasing for Nanopore Sequencing☆51Mar 5, 2023Updated 3 years ago
- Methylmap is a tool for visualization of modified nucleotide frequencies for large cohort sizes.☆22Jan 23, 2026Updated 9 months ago
- A python program to call methylation (m6A in DNA) from nanopore signal data☆46Jun 24, 2021Updated 5 years ago
- Nanopore raw signal repeat detection pipeline☆45Mar 17, 2023Updated 3 years ago
- Tombo is a suite of tools primarily for the identification of modified nucleotides from raw nanopore sequencing data.☆232May 4, 2023Updated 3 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- GpC methylation from fast5:s to reference anchored calls☆10Nov 18, 2020Updated 5 years ago
- Reproducibility workflow for Gigante et al., 2018: Using long-read sequencing to detect imprinted DNA methylation☆23Mar 4, 2019Updated 7 years ago
- Automatic DNA methylation detection from nanopore tools and their consensus model☆77May 22, 2023Updated 3 years ago
- ☆37Oct 7, 2026Updated 3 weeks ago
- HMM-HDP models for MinION signal alignments☆47Apr 10, 2017Updated 9 years ago
- Snakemake pipelines for nanopore sequencing data archiving and processing☆92Feb 2, 2022Updated 4 years ago
- An algorithm for centromere assembly using long error-prone reads☆25May 25, 2021Updated 5 years ago
- Oxford Nanopore Technologies fast5 API software☆154Feb 27, 2024Updated 2 years ago
- This repository contains the code developed for the NanOlympicsMod project.☆12Jan 29, 2024Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Animated GIF of flow cell performance from sequencing summary file.☆13Feb 20, 2018Updated 8 years ago
- modPhred is a pipeline for detection of DNA/RNA modifications from raw ONT data☆15Apr 29, 2024Updated 2 years ago
- Scalable long read self-correction and assembly polishing with multiple sequence alignment☆56Feb 6, 2024Updated 2 years ago
- Signal-level algorithms for MinION data☆601Aug 5, 2023Updated 3 years ago
- SquiggleKit: A toolkit for manipulating nanopore signal data☆130Feb 16, 2024Updated 2 years ago
- Training models for basecalling Oxford Nanopore reads☆116Jan 13, 2022Updated 4 years ago
- ☆83Oct 27, 2020Updated 6 years ago
- Version II of Mandalorion☆32Feb 1, 2019Updated 7 years ago
- PEPPER-Margin-DeepVariant☆261Jan 12, 2024Updated 2 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- nanodisco: a toolbox for discovering and exploiting multiple types of DNA methylation from individual bacteria and microbiomes using nano…☆74May 20, 2022Updated 4 years ago
- INC-Seq: Accurate single molecule reads using nanopore sequencing☆16Sep 11, 2020Updated 6 years ago
- A snakemake pipeline for SV analysis from nanopore genome sequencing☆52Feb 24, 2020Updated 6 years ago
- Tools for plotting methylation data in various ways☆200Oct 10, 2026Updated 2 weeks ago
- Benchmarking of long-read assembly tools for bacterial whole genomes☆172Mar 15, 2021Updated 5 years ago
- Methylation/modified base calling separated from basecalling.☆189Sep 17, 2024Updated 2 years ago
- Pipeline for de novo clustering of long transcriptomic reads☆26Jan 26, 2022Updated 4 years ago