DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets
☆34Feb 25, 2021Updated 5 years ago
Alternatives and similar repositories for pycoMeth
Users that are interested in pycoMeth are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆32Jul 3, 2023Updated 3 years ago
- Plotting tools for nanopore methylation data☆96Sep 11, 2026Updated 3 weeks ago
- Detecting methylation using signal-level features from Nanopore sequencing reads☆119Jun 4, 2023Updated 3 years ago
- ☆31Feb 5, 2021Updated 5 years ago
- Megalodon is a research command line tool to extract high accuracy modified base and sequence variant calls from raw nanopore reads by a…☆205May 4, 2023Updated 3 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Methylation Phasing for Nanopore Sequencing☆51Mar 5, 2023Updated 3 years ago
- DeepMP is a computational tool to detect DNA modifications in Nanopore sequencing data☆27Mar 18, 2022Updated 4 years ago
- Ultra-fast methylation calling and event alignment tool for nanopore sequencing data (supports CUDA acceleration)☆165Aug 21, 2026Updated last month
- GpC methylation from fast5:s to reference anchored calls☆10Nov 18, 2020Updated 5 years ago
- Extract modifed base call information from Guppy Fast5 files.☆14Mar 28, 2022Updated 4 years ago
- A python program to call methylation (m6A in DNA) from nanopore signal data☆47Jun 24, 2021Updated 5 years ago
- An algorithm for centromere assembly using long error-prone reads☆25May 25, 2021Updated 5 years ago
- Research release basecalling models and configurations☆122Sep 7, 2026Updated last month
- This repository contains the code developed for the NanOlympicsMod project.☆12Jan 29, 2024Updated 2 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Methylmap is a tool for visualization of modified nucleotide frequencies for large cohort sizes.☆23Jan 23, 2026Updated 8 months ago
- Oxford Nanopore Technologies fast5 API software☆155Feb 27, 2024Updated 2 years ago
- Animated GIF of flow cell performance from sequencing summary file.☆13Feb 20, 2018Updated 8 years ago
- HMM-HDP models for MinION signal alignments☆47Apr 10, 2017Updated 9 years ago
- Version II of Mandalorion☆32Feb 1, 2019Updated 7 years ago
- INC-Seq: Accurate single molecule reads using nanopore sequencing☆16Sep 11, 2020Updated 6 years ago
- Scalable long read self-correction and assembly polishing with multiple sequence alignment☆56Feb 6, 2024Updated 2 years ago
- ☆37Updated this week
- modPhred is a pipeline for detection of DNA/RNA modifications from raw ONT data☆16Apr 29, 2024Updated 2 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Training models for basecalling Oxford Nanopore reads☆117Jan 13, 2022Updated 4 years ago
- Automatic DNA methylation detection from nanopore tools and their consensus model☆78May 22, 2023Updated 3 years ago
- Nanopore raw signal repeat detection pipeline☆45Mar 17, 2023Updated 3 years ago
- NANOME pipeline (Nanopore long-read sequencing consensus DNA methylation detection method and pipeline)☆34Mar 13, 2026Updated 6 months ago
- Tombo is a suite of tools primarily for the identification of modified nucleotides from raw nanopore sequencing data.☆232May 4, 2023Updated 3 years ago
- PEPPER-Margin-DeepVariant☆261Jan 12, 2024Updated 2 years ago
- Enabling differential allele-specific analysis☆12Sep 10, 2026Updated last month
- Reproducibility workflow for Gigante et al., 2018: Using long-read sequencing to detect imprinted DNA methylation☆23Mar 4, 2019Updated 7 years ago
- Snakemake pipelines for nanopore sequencing data archiving and processing☆92Feb 2, 2022Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Haplotype aware de novo assembly of diploid genome from long reads☆54Mar 16, 2022Updated 4 years ago
- Filter fasta/fastq(.gz) files by ID and/or sequence length☆14Feb 8, 2020Updated 6 years ago
- ☆83Oct 27, 2020Updated 5 years ago
- A versatile sequenced read processor for nanopore direct RNA sequencing☆81May 24, 2020Updated 6 years ago
- Tools for plotting methylation data in various ways☆199Sep 17, 2026Updated 3 weeks ago
- Detection of RNA modifications from Oxford Nanopore direct RNA sequencing reads (Liu*, Begik* et al., Nature Comm 2019)☆118Mar 2, 2026Updated 7 months ago
- H.E.L.E.N. (Homopolymer Encoded Long-read Error-corrector for Nanopore)☆73Oct 28, 2020Updated 5 years ago