timplab / Cas9EnrichmentLinks
scripts for analysis associated with Cas9Enrichment publication
☆12Updated 5 years ago
Alternatives and similar repositories for Cas9Enrichment
Users that are interested in Cas9Enrichment are comparing it to the libraries listed below
Sorting:
- A tool to detect structural variant☆18Updated 2 years ago
- Debarcer: A package for De-Barcoding and Error Correction of sequencing data containing molecular barcodes☆15Updated 4 years ago
- ☆31Updated 9 months ago
- Digenome-toolkit ver2.☆16Updated 3 years ago
- Scripts for identifying sites with differential error rates in mapped nanopore DRS data☆11Updated 4 years ago
- Accurate Typing of Human Leukocyte Antigen (HLA) by Oxford Nanopore Sequencing☆16Updated 7 years ago
- viGEN - A bioinformatics pipeline for the exploration of viral RNA in human NGS data☆28Updated 11 months ago
- CNV calling algorithm for detection of homozygous and hemizygous deletions from whole exome sequencing data☆12Updated 7 years ago
- A pipeline to detect chimeric transcripts derived from genes and transposable elements.☆30Updated last month
- A computational algorithm and software tool for fast and accurate detection of gene fusion by long-read transcriptome sequencing☆21Updated 4 years ago
- A transposition caller.☆10Updated last year
- Haplotype-aware assembly of complex regions and small genomes☆15Updated this week
- Nanopanel2: a somatic variant caller for Nanopore panel sequencing data☆11Updated 4 years ago
- NANOME pipeline (Nanopore long-read sequencing consensus DNA methylation detection method and pipeline)☆32Updated 2 months ago
- Jitterbug is a bioinformatic software that predicts insertion sites of transposable elements in a sample sequenced by short paired-end re…☆17Updated 8 years ago
- RNA modification detection using Nanopore raw reads with Deep One Class classification☆19Updated 4 years ago
- Splits fastq files evenly☆22Updated 5 years ago
- HMM-HDP models for MinION signal alignments☆46Updated 8 years ago
- TIDDIT - structural variant calling☆76Updated 5 months ago
- Improving gene isoform quantification with miniQuant☆28Updated last week
- Ultra-efficient and sensitive method to search for Open Reading Frames in spliced genomes guided by reference annotation to maximize prot…☆35Updated 3 months ago
- ☆30Updated 4 years ago
- Nextflow pipeline designed for rapid onsite QC and variant calling of Oxford Nanopore data (following basecalling and demultiplexing with…☆13Updated last year
- Liftover VCF files☆18Updated 8 years ago
- Haplotype-specific somatic copy number aberrations/profiling from long reads sequencing data☆57Updated this week
- Variant quality checking scripts.☆11Updated 9 years ago
- Fast and scalable variant annotation tool☆30Updated 3 years ago
- processing 10x genomics reads☆26Updated 5 years ago
- A python program to call methylation (m6A in DNA) from nanopore signal data☆47Updated 4 years ago
- Scripts for analyses and figures for SNP STR Imputation manuscript☆14Updated 7 years ago