nanodisco: a toolbox for discovering and exploiting multiple types of DNA methylation from individual bacteria and microbiomes using nanopore sequencing.
☆74May 20, 2022Updated 3 years ago
Alternatives and similar repositories for nanodisco
Users that are interested in nanodisco are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Nanomotif - a tool for identifying methylated motifs in metagenomic samples☆35Mar 17, 2026Updated last week
- Nanopore plasmid pipeline (FAST5 basecalling, assembly, plasmid identification and antimicrobial resistance genes identification).☆13Apr 20, 2021Updated 4 years ago
- A toolkit for exploring prokaryotic methylation and base modifications in nanopore sequencing☆53Feb 4, 2026Updated last month
- A tool for generating consensus long-read assemblies for bacterial genomes☆341Sep 11, 2025Updated 6 months ago
- Automated strain separation of low-complexity metagenomes☆52Nov 10, 2021Updated 4 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Research release basecalling models and configurations☆117May 21, 2025Updated 10 months ago
- Methylation/modified base calling separated from basecalling.☆185Sep 17, 2024Updated last year
- DeepMP is a computational tool to detect DNA modifications in Nanopore sequencing data☆27Mar 18, 2022Updated 4 years ago
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆30Jul 3, 2023Updated 2 years ago
- JTK -- a regional diploid genome assembler☆26Oct 20, 2024Updated last year
- Non-redundant pangenome assemblies from multiple genomes or bins☆15May 13, 2025Updated 10 months ago
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆40Sep 17, 2025Updated 6 months ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆15Jun 26, 2018Updated 7 years ago
- Lightweight bioinformatics pipeline for microbial genome recovery☆18Oct 23, 2025Updated 5 months ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- HiCBin: binning metagenomic contigs and recovering metagenome-assembled genomes using Hi-C contact maps☆14May 4, 2023Updated 2 years ago
- Bioinformatics pipeline for recovery and analysis of metagenome-assembled genomes☆54Oct 24, 2025Updated 5 months ago
- ☆29Feb 5, 2021Updated 5 years ago
- snapper☆13Jul 8, 2024Updated last year
- Phylogeny Enhanded Prediction of PAN-genome☆43Jul 17, 2020Updated 5 years ago
- De novo assembler for single molecule sequencing reads using repeat graphs☆910May 2, 2025Updated 10 months ago
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆69Aug 10, 2021Updated 4 years ago
- ☆83Feb 26, 2026Updated last month
- Plasmid analysis using rearrangement distances☆50Mar 12, 2026Updated 2 weeks ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Signal-level algorithms for MinION data☆595Aug 5, 2023Updated 2 years ago
- Tools for plotting methylation data in various ways☆178Updated this week
- Graph-based assembly phasing☆91Nov 25, 2025Updated 4 months ago
- Detecting methylation using signal-level features from Nanopore sequencing reads☆118Jun 4, 2023Updated 2 years ago
- tool to determine optimal refrerence genome given a set of fasta files☆15May 18, 2023Updated 2 years ago
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆35Apr 26, 2025Updated 11 months ago
- strain-level analysis tools☆39Oct 21, 2024Updated last year
- Bioinformatics program inStrain☆182Mar 12, 2026Updated 2 weeks ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆222Feb 23, 2026Updated last month
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Population analysis PIPEline 🛠🧬☆23Mar 2, 2026Updated 3 weeks ago
- Nanopore SimulatION is a tool for simulating an Oxfornd Nanopore Technologies MinION device for bioinformatic development.☆19Nov 30, 2017Updated 8 years ago
- viralFlye pipeline☆18Aug 12, 2024Updated last year
- Tombo is a suite of tools primarily for the identification of modified nucleotides from raw nanopore sequencing data.☆234May 4, 2023Updated 2 years ago
- [MOVED] Moved to paoloshasta/shasta. De novo assembly from Oxford Nanopore reads☆273Oct 13, 2022Updated 3 years ago
- ☆13Jan 8, 2020Updated 6 years ago
- Plotting tools for nanopore methylation data☆95Jul 28, 2025Updated 7 months ago