nanodisco: a toolbox for discovering and exploiting multiple types of DNA methylation from individual bacteria and microbiomes using nanopore sequencing.
☆75May 20, 2022Updated 4 years ago
Alternatives and similar repositories for nanodisco
Users that are interested in nanodisco are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Nanomotif - a tool for identifying methylated motifs in metagenomic samples☆35Apr 10, 2026Updated last month
- Nanopore plasmid pipeline (FAST5 basecalling, assembly, plasmid identification and antimicrobial resistance genes identification).☆13Apr 20, 2021Updated 5 years ago
- A toolkit for exploring prokaryotic methylation and base modifications in nanopore sequencing☆55May 5, 2026Updated 3 weeks ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆344Sep 11, 2025Updated 8 months ago
- Automated strain separation of low-complexity metagenomes☆52Nov 10, 2021Updated 4 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Research release basecalling models and configurations☆117Updated this week
- Methylation/modified base calling separated from basecalling.☆187Sep 17, 2024Updated last year
- DeepMP is a computational tool to detect DNA modifications in Nanopore sequencing data☆27Mar 18, 2022Updated 4 years ago
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆30Jul 3, 2023Updated 2 years ago
- JTK -- a regional diploid genome assembler☆26Apr 22, 2026Updated last month
- Non-redundant pangenome assemblies from multiple genomes or bins☆15May 13, 2025Updated last year
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆40Sep 17, 2025Updated 8 months ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆15Jun 26, 2018Updated 7 years ago
- Lightweight bioinformatics pipeline for microbial genome recovery☆18Oct 23, 2025Updated 7 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- HiCBin: binning metagenomic contigs and recovering metagenome-assembled genomes using Hi-C contact maps☆14May 4, 2023Updated 3 years ago
- Bioinformatics pipeline for recovery and analysis of metagenome-assembled genomes☆55Oct 24, 2025Updated 7 months ago
- ☆30Feb 5, 2021Updated 5 years ago
- snapper☆13Jul 8, 2024Updated last year
- Phylogeny Enhanded Prediction of PAN-genome☆44Jul 17, 2020Updated 5 years ago
- De novo assembler for single molecule sequencing reads using repeat graphs☆930Apr 3, 2026Updated last month
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆70Aug 10, 2021Updated 4 years ago
- ☆89Apr 5, 2026Updated last month
- Plasmid analysis using rearrangement distances☆55May 13, 2026Updated last week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Signal-level algorithms for MinION data☆596Aug 5, 2023Updated 2 years ago
- Tools for plotting methylation data in various ways☆190May 16, 2026Updated last week
- Graph-based assembly phasing☆94Nov 25, 2025Updated 6 months ago
- Fast pairwise transmission inference from single genome and/or metagenomic data☆34Aug 1, 2025Updated 9 months ago
- Detecting methylation using signal-level features from Nanopore sequencing reads☆118Jun 4, 2023Updated 2 years ago
- tool to determine optimal refrerence genome given a set of fasta files☆15May 18, 2023Updated 3 years ago
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆36May 14, 2026Updated last week
- strain-level analysis tools☆41Oct 21, 2024Updated last year
- Bioinformatics program inStrain☆186Mar 12, 2026Updated 2 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A tool for generating consensus long-read assemblies for bacterial genomes☆232Apr 27, 2026Updated 3 weeks ago
- Population analysis PIPEline 🛠🧬☆24Mar 2, 2026Updated 2 months ago
- Nanopore SimulatION is a tool for simulating an Oxfornd Nanopore Technologies MinION device for bioinformatic development.☆19Nov 30, 2017Updated 8 years ago
- viralFlye pipeline☆19Aug 12, 2024Updated last year
- Tombo is a suite of tools primarily for the identification of modified nucleotides from raw nanopore sequencing data.☆233May 4, 2023Updated 3 years ago
- [MOVED] Moved to paoloshasta/shasta. De novo assembly from Oxford Nanopore reads☆273Oct 13, 2022Updated 3 years ago
- ☆13Jan 8, 2020Updated 6 years ago