fanglab / nanodiscoLinks
nanodisco: a toolbox for discovering and exploiting multiple types of DNA methylation from individual bacteria and microbiomes using nanopore sequencing.
☆70Updated 3 years ago
Alternatives and similar repositories for nanodisco
Users that are interested in nanodisco are comparing it to the libraries listed below
Sorting:
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆70Updated 3 years ago
- Adapter trimmer for Oxford Nanopore reads using ab initio method☆42Updated 7 months ago
- A toolkit for exploring prokaryotic methylation and base modifications in nanopore sequencing☆48Updated 2 weeks ago
- ☆82Updated last year
- Assembly methods for nanopore-based metagenomic sequencing: a comparative study☆18Updated 5 years ago
- PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.☆58Updated last year
- GTDB taxonomy taxdump files with trackable TaxIds☆54Updated last month
- post processing of bacterial pangenome gene presence/absence matrices☆60Updated 4 months ago
- Prediction of prophages from bacterial genomes☆78Updated 2 weeks ago
- The SYNY pipeline investigates synteny between species by reconstructing protein clusters from gene pairs.☆43Updated 2 months ago
- a collection of scripts for organising bacterial genomes by species☆76Updated 3 years ago
- FastOMA is a scalable software package to infer orthology relationship.☆76Updated last week
- Detection of pseudogene candidates in bacterial and archaeal genomes.☆49Updated last year
- Create BIOM-format tables (http://biom-format.org) from Kraken output (http://ccb.jhu.edu/software/kraken/, https://github.com/DerrickWoo…☆55Updated 3 years ago
- Sorts amplicons from Nanopore sequencing data based on similarity☆38Updated 3 weeks ago
- An accurate and sensitive bacterial plasmid identification tool based on deep machine-learning of shared k-mers and genomic features.☆44Updated 2 years ago
- Fast k-mer based tool for multi locus sequence typing (MLST)☆44Updated 4 years ago
- Bifrost graph gene caller.☆95Updated 9 months ago
- PlasmidID is a mapping-based, assembly-assisted plasmid identification tool that analyzes and gives graphic solution for plasmid identifi…☆41Updated 3 years ago
- ☆72Updated last month
- A scalable bacterial genome assembly, annotation and analysis pipeline☆74Updated last year
- Perl script for simulating PCR reactions. Extract sequences from a query based on primer sequences.☆47Updated 2 months ago
- A tool for removing redundant genomes from a set of assemblies☆71Updated last year
- Python code for versatile Functional Ontology Assignments for Metagenomes searching via Hidden Markov Model (HMM) with environmental focu…☆58Updated 2 months ago
- A tool for drawing ANI clustermap between all-vs-all microbial genomes☆83Updated last month
- ☆52Updated last year
- From genomes to phenotypes: Traitar, the microbial trait analyzer☆59Updated 5 years ago
- Bash pipeline for analysis of ONT full-length 16S sequences in QIIME2☆30Updated 5 years ago
- Split Kmer Analysis☆65Updated 3 years ago
- CGView is a Java package for generating high-quality, zoomable maps of circular genomes.☆44Updated 11 months ago