fanglab / nanodiscoLinks
nanodisco: a toolbox for discovering and exploiting multiple types of DNA methylation from individual bacteria and microbiomes using nanopore sequencing.
☆71Updated 3 years ago
Alternatives and similar repositories for nanodisco
Users that are interested in nanodisco are comparing it to the libraries listed below
Sorting:
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆69Updated 4 years ago
- A scalable bacterial genome assembly, annotation and analysis pipeline☆75Updated 2 years ago
- Adapter trimmer for Oxford Nanopore reads using ab initio method☆54Updated last year
- Snakemake workflow for metagenomic classification with Kraken2☆66Updated 2 years ago
- tools for assessing the accuracy of genome assemblies☆35Updated last year
- ☆84Updated 2 years ago
- GTDB taxonomy taxdump files with trackable TaxIds☆56Updated 7 months ago
- Tiberius is a deep learning gene finder.☆82Updated last week
- A toolkit for exploring prokaryotic methylation and base modifications in nanopore sequencing☆51Updated last week
- SAMSA pipeline, version 2.0. An open-source metatranscriptomics pipeline for analyzing microbiome data, built around DIAMOND and customi…☆60Updated last year
- Assembly methods for nanopore-based metagenomic sequencing: a comparative study☆18Updated 5 years ago
- Long-read metagenomic analysis☆107Updated 2 years ago
- PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.☆62Updated 2 years ago
- A tool for removing redundant genomes from a set of assemblies☆77Updated 3 months ago
- Fast k-mer based tool for multi locus sequence typing (MLST)☆45Updated 5 years ago
- Microbiome classification pipeline☆65Updated 6 months ago
- a collection of scripts for organising bacterial genomes by species☆81Updated 3 years ago
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆46Updated 2 years ago
- Development version of Easyfig☆102Updated last year
- Synteny Imager☆65Updated last month
- Bash pipeline for analysis of ONT full-length 16S sequences in QIIME2☆29Updated 5 years ago
- Prediction of prophages from bacterial genomes☆82Updated 5 months ago
- The SYNY pipeline investigates synteny between species by reconstructing protein clusters from gene pairs.☆47Updated 5 months ago
- Detection of pseudogene candidates in bacterial and archaeal genomes.☆52Updated last year
- Perl script for simulating PCR reactions. Extract sequences from a query based on primer sequences.☆48Updated 8 months ago
- viralVerify: viral contig verification tool☆72Updated 4 years ago
- Protein hint generation pipeline for gene finding in eukaryotic genomes☆60Updated 2 years ago
- This is the codebase for Recycler, described in our manuscript: https://academic.oup.com/bioinformatics/article/33/4/475/2623362, by Roye…☆58Updated 4 years ago
- CLI tool to annotate genes with KOfam☆85Updated 2 years ago
- ☆63Updated last year