WGLab / DeepRepeatLinks
An accurate repeat detection from Nanopore data using deep learning and image techniques
☆24Updated 2 years ago
Alternatives and similar repositories for DeepRepeat
Users that are interested in DeepRepeat are comparing it to the libraries listed below
Sorting:
- ☆32Updated last year
- modPhred is a pipeline for detection of DNA/RNA modifications from raw ONT data☆16Updated last year
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆53Updated 10 months ago
- Variant annotation and merging pipeline☆41Updated 5 months ago
- Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing☆39Updated last month
- MethPhaser: methylation-based haplotype phasing of human genomes☆52Updated 10 months ago
- Working space for the GIAB TR benchmarking project☆23Updated last year
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- Identify and annotate TE-mediated insertions in long-read sequence data☆46Updated 6 months ago
- A pipeline to detect chimeric transcripts derived from genes and transposable elements.☆34Updated 5 months ago
- A tutorial on structural variant calling for short read sequencing data☆38Updated last year
- ☆36Updated last year
- A gene fusion caller for long-read transcriptome sequencing data.☆22Updated last year
- ☆33Updated 3 years ago
- ☆38Updated 2 years ago
- ☆38Updated last year
- Structural variant merging tool☆57Updated last year
- Split-read pipeline for the identification of non-reference TE insertions with TSDs☆25Updated 5 years ago
- ☆51Updated last year
- Detection and genotyping of structural variants☆19Updated 3 months ago
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆30Updated 2 years ago
- ☆30Updated 4 years ago
- Genotyping of segregating mobile elements insertions☆19Updated 4 years ago
- ☆33Updated 2 years ago
- Method for inferring path posterior probabilities and abundances from pangenome graph read alignments☆59Updated 4 months ago
- SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel☆38Updated 8 months ago
- StrVCTVRE, a structural variant classifier for exonic deletions and duplications☆19Updated 2 years ago
- A module for improving the insertion sequences of structural variant calls☆33Updated 4 years ago
- ☆20Updated 3 years ago
- Error correction of ONT transcript reads☆58Updated 2 years ago