WGLab / DeepRepeatLinks
An accurate repeat detection from Nanopore data using deep learning and image techniques
☆23Updated 2 years ago
Alternatives and similar repositories for DeepRepeat
Users that are interested in DeepRepeat are comparing it to the libraries listed below
Sorting:
- Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing☆38Updated last year
- ☆31Updated last year
- MethPhaser: methylation-based haplotype phasing of human genomes☆50Updated 7 months ago
- A pipeline to detect chimeric transcripts derived from genes and transposable elements.☆30Updated 3 months ago
- ☆34Updated 2 years ago
- Identify and annotate TE-mediated insertions in long-read sequence data☆44Updated 3 months ago
- ☆36Updated last year
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆52Updated 7 months ago
- ☆30Updated 4 years ago
- Method for inferring path posterior probabilities and abundances from pangenome graph read alignments☆58Updated last month
- Working space for the GIAB TR benchmarking project☆23Updated last year
- An insertion caller for Illumina paired-end WGS data.☆23Updated 2 months ago
- ☆20Updated 3 years ago
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- Variant annotation and merging pipeline☆39Updated 3 months ago
- Nanopanel2: a somatic variant caller for Nanopore panel sequencing data☆11Updated 4 years ago
- Long-read Isoform Quantification and Analysis☆38Updated 7 months ago
- Structural variant merging tool☆55Updated last year
- heuristics to merge structural variant calls in VCF format.☆38Updated 9 years ago
- TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain☆21Updated last year
- ☆38Updated 2 years ago
- DNA multiple sequence aligner, official version from Penn State's Miller Lab☆36Updated 6 years ago
- A python tool box for fast and accurate quality control, conversion and alignment of nanopore sequencing data☆20Updated 3 years ago
- Simple library/pipeline to generate and handle Hi-C data.☆39Updated 11 months ago
- ☆36Updated last year
- Split-read pipeline for the identification of non-reference TE insertions with TSDs☆25Updated 5 years ago
- new repo☆28Updated 4 years ago
- modPhred is a pipeline for detection of DNA/RNA modifications from raw ONT data☆16Updated last year
- ☆51Updated 6 years ago
- Immuological gene typing and annotation for genome assembly☆38Updated 7 months ago