VanLoo-lab / CAMDAC
☆11Updated last month
Related projects: ⓘ
- ☆21Updated 3 months ago
- Somatic coding and non-coding mutation enrichment analysis for tumor WGS data☆9Updated 3 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆26Updated 6 years ago
- HiCnv is used to call copy number variations and breakpoints from Hi-C data☆21Updated 5 months ago
- Reproducibility workflow for Gigante et al., 2018: Using long-read sequencing to detect imprinted DNA methylation☆22Updated 5 years ago
- nanoNOMe (Nucleosome Occupancy and Methylome nanopore sequencing) Analysis☆17Updated last year
- Enabling differential allele-specific analysis☆11Updated 2 years ago
- R Package for phasing of single cell Strand-seq data☆10Updated 5 months ago
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆12Updated last month
- Plot CNV data with a genome viewer in R☆15Updated 7 years ago
- Computational analyses of WGS, mate-pair, RNA-seq, Hi-C and Capture-C data from highly rearranged balancer chromosomes in Drosophila mela…☆10Updated 4 years ago
- The R package "sarlacc" contains a pipeline to analyse nanopore sequencing data. It trims adapter sequences, retrieves optional UMI's, cl…☆13Updated 5 years ago
- Filter and prioritize fusion calls☆20Updated last month
- Third-generation fusion gene detection☆12Updated last year
- End-guided RNA assembler☆15Updated 11 months ago
- ☆31Updated last year
- Allo: a multi-mapped read rescue strategy for gene regulatory analyses☆22Updated 2 weeks ago
- Software to assemble contigs/scaffolds into chromosomes using Hi-C data☆27Updated 4 years ago
- Integrative analysis of complex structural variants☆21Updated 4 years ago
- Nextflow implementation of the GATK HaplotypeCaller pipeline☆12Updated 6 months ago
- ☆12Updated 4 years ago
- GENome Organisation Visual Analytics☆13Updated 2 years ago
- R package for DNA methylation analysis☆17Updated last month
- Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA☆25Updated 3 months ago
- Genotyping of segregating mobile elements insertions☆19Updated 3 years ago
- Codes and Data for FFPEsig manuscript☆15Updated 8 months ago
- ☆18Updated this week
- A whole genome bisulfite sequencing (WGBS) pipeline for the alignment and QC of DNA methylation that goes from from raw reads (FastQ) to …☆20Updated 2 years ago
- Workflow for Sequenza, cellularity and ploidy☆16Updated 2 months ago
- ☆23Updated 3 years ago