☆11Sep 22, 2025Updated 5 months ago
Alternatives and similar repositories for CAMDAC
Users that are interested in CAMDAC are comparing it to the libraries listed below
Sorting:
- Battenberg R package for subclonal copynumber estimation☆95Feb 20, 2026Updated last week
- Mutational Signature Comprehensive Analysis Toolkit☆15Feb 19, 2026Updated last week
- ☆10Mar 4, 2025Updated 11 months ago
- ☆14Oct 9, 2025Updated 4 months ago
- Viola is a flexible and powerful python package designed specifically for analysis of genomic structural variant (SV) signatures.☆27Jul 26, 2024Updated last year
- Consistent Clusters for scRNA-seq☆11Oct 6, 2021Updated 4 years ago
- SigProfilerTopography allows evaluating the effect of chromatin organization, histone modifications, transcription factor binding, DNA re…☆24Updated this week
- Nextflow implementation of the GATK HaplotypeCaller pipeline☆13Dec 27, 2025Updated 2 months ago
- BAMixChecker: A fast and efficient tool for sample matching checkup☆15Jun 12, 2022Updated 3 years ago
- Singularity port of HLA typing based on an input exome BAM file and is currently infers infers alleles for the three major MHC class I (…☆14Jan 15, 2017Updated 9 years ago
- analysis pipeline for CODEC data☆13Oct 27, 2025Updated 4 months ago
- Detects human contamination in bam files☆16Sep 10, 2020Updated 5 years ago
- ☆13Sep 18, 2017Updated 8 years ago
- Methods and analysis for Garcia-Nieto, et al. Somatic mutations☆17Jan 5, 2020Updated 6 years ago
- Allele-Specific Quantification of Structural Variations in Cancer Genomes☆18Mar 5, 2019Updated 6 years ago
- Characterization of Structural Variation in Chinese samples☆18Dec 22, 2021Updated 4 years ago
- NOTE: This package has been renamed to sparrow and will be submitted to Bioconductor 3.14. Please use that package instead. This is kept …☆21Nov 16, 2020Updated 5 years ago
- nanoNOMe (Nucleosome Occupancy and Methylome nanopore sequencing) Analysis☆20Nov 18, 2022Updated 3 years ago
- Search for activating regulatory variants in the tumor genome☆14Apr 11, 2025Updated 10 months ago
- Calculates the Variant Allele Fraction of variants in VCF files☆19Nov 28, 2024Updated last year
- variation discovery using long range information in linked-reads☆15Oct 5, 2021Updated 4 years ago
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆20Feb 9, 2026Updated 3 weeks ago
- Marker Selection by matching manifolds and elastic net☆23Oct 22, 2024Updated last year
- FMtree: A fast locating algorithm of FM-indexes for genomic data☆18Sep 27, 2017Updated 8 years ago
- Inference of Minimal Event Distance Aneuploidy Lineage Tree based on single cell copy number profile☆21Sep 8, 2023Updated 2 years ago
- MSKCC Reis-Filho Lab pipeline thingy☆18Feb 15, 2026Updated 2 weeks ago
- Easy Copy Number !☆21Aug 27, 2025Updated 6 months ago
- BANDITS: Bayesian ANalysis of DIfferenTial Splicing☆19Sep 29, 2025Updated 5 months ago
- This script use to analyze the immune repertoire sequenced by high throughtput sequencing☆27Dec 16, 2021Updated 4 years ago
- Metagenomics microbial abundance quantification☆28Sep 22, 2022Updated 3 years ago
- ☆11Jul 3, 2022Updated 3 years ago
- Flexible and efficient tests for evidence of positive selection anywhere in the cancer genome.☆26Jul 30, 2022Updated 3 years ago
- Somatic indel discovery tool for tumor RNA-Seq data.☆24Nov 21, 2025Updated 3 months ago
- ☆27Feb 9, 2026Updated 3 weeks ago
- Structural Variants Assessment Based on Haplotype-resolved Assemblies☆21Apr 28, 2023Updated 2 years ago
- ☆21Updated this week
- for visual evaluation of read support for structural variation☆56Jun 4, 2024Updated last year
- A framework to infer mutational signatures in cancer over time☆56Jul 9, 2019Updated 6 years ago
- Versatile simulator for structural variance and Nanopore/PacBio sequencing reads☆28Aug 21, 2025Updated 6 months ago