Detecting methylation using signal-level features from Nanopore sequencing reads
☆118Jun 4, 2023Updated 2 years ago
Alternatives and similar repositories for deepsignal
Users that are interested in deepsignal are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Tombo is a suite of tools primarily for the identification of modified nucleotides from raw nanopore sequencing data.☆233May 4, 2023Updated 3 years ago
- ☆29Oct 17, 2023Updated 2 years ago
- DeepMod: a deep-learning tool for genomic-scale, strand-sensitive and single-nucleotide based detection of DNA modifications☆105Mar 8, 2023Updated 3 years ago
- Megalodon is a research command line tool to extract high accuracy modified base and sequence variant calls from raw nanopore reads by a…☆204May 4, 2023Updated 3 years ago
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆34Feb 25, 2021Updated 5 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Plotting tools for nanopore methylation data☆95Jul 28, 2025Updated 9 months ago
- Methylation Phasing for Nanopore Sequencing☆50Mar 5, 2023Updated 3 years ago
- Signal-level algorithms for MinION data☆596Aug 5, 2023Updated 2 years ago
- A python program to call methylation (m6A in DNA) from nanopore signal data☆47Jun 24, 2021Updated 4 years ago
- Research release basecalling models and configurations☆117May 21, 2025Updated 11 months ago
- Automatic DNA methylation detection from nanopore tools and their consensus model☆79May 22, 2023Updated 2 years ago
- SquiggleKit: A toolkit for manipulating nanopore signal data☆128Feb 16, 2024Updated 2 years ago
- Detection of RNA modifications from Oxford Nanopore direct RNA sequencing reads (Liu*, Begik* et al., Nature Comm 2019)☆118Mar 2, 2026Updated 2 months ago
- Ultra-fast methylation calling and event alignment tool for nanopore sequencing data (supports CUDA acceleration)☆163Mar 19, 2026Updated last month
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Flip-flop basecaller for Oxford Nanopore reads☆99Jan 13, 2022Updated 4 years ago
- NanoMod: a computational tool to detect DNA modifications using Nanopore long-read sequencing data☆38Feb 2, 2022Updated 4 years ago
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆30Jul 3, 2023Updated 2 years ago
- HMM-HDP models for MinION signal alignments☆46Apr 10, 2017Updated 9 years ago
- ☆30Feb 5, 2021Updated 5 years ago
- Training models for basecalling Oxford Nanopore reads☆115Jan 13, 2022Updated 4 years ago
- Snakemake pipelines for nanopore sequencing data archiving and processing☆91Feb 2, 2022Updated 4 years ago
- NANOME pipeline (Nanopore long-read sequencing consensus DNA methylation detection method and pipeline)☆34Mar 13, 2026Updated last month
- VBZ compression plugin for nanopore signal data☆43Apr 7, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Oxford Nanopore Technologies fast5 API software☆155Feb 27, 2024Updated 2 years ago
- Methylation/modified base calling separated from basecalling.☆186Sep 17, 2024Updated last year
- Clair: Exploring the limit of using deep neural network on pileup data for germline variant calling☆105Sep 1, 2022Updated 3 years ago
- Detecting methylation using signal-level features from Nanopore sequencing reads of plants☆66Apr 15, 2026Updated 3 weeks ago
- Sequence correction provided by ONT Research☆508Apr 8, 2026Updated 3 weeks ago
- A PyTorch Basecaller for Oxford Nanopore Reads☆430Feb 20, 2026Updated 2 months ago
- Variant calling tool for long-read sequencing data☆117Mar 19, 2025Updated last year
- ☆46Jul 6, 2017Updated 8 years ago
- A segmentation toolkit for segment the Nanopore RNA signal.☆20Feb 18, 2025Updated last year
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Structural variant caller for low-depth long-read sequencing data☆48Feb 5, 2026Updated 3 months ago
- A short analysis of Oxford Nanopore consensus accuracy for bacterial genome assemblies☆60Aug 6, 2019Updated 6 years ago
- ☆84Mar 3, 2025Updated last year
- ☆52Jun 25, 2024Updated last year
- nanodisco: a toolbox for discovering and exploiting multiple types of DNA methylation from individual bacteria and microbiomes using nano…☆75May 20, 2022Updated 3 years ago
- GpC methylation from fast5:s to reference anchored calls☆10Nov 18, 2020Updated 5 years ago
- Data and analysis for NA12878 genome on nanopore☆405Nov 22, 2022Updated 3 years ago