Detecting methylation using signal-level features from Nanopore sequencing reads
☆118Jun 4, 2023Updated 3 years ago
Alternatives and similar repositories for deepsignal
Users that are interested in deepsignal are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆29Oct 17, 2023Updated 3 years ago
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆33Feb 25, 2021Updated 5 years ago
- Tombo is a suite of tools primarily for the identification of modified nucleotides from raw nanopore sequencing data.☆232May 4, 2023Updated 3 years ago
- DeepMod: a deep-learning tool for genomic-scale, strand-sensitive and single-nucleotide based detection of DNA modifications☆104Mar 8, 2023Updated 3 years ago
- Megalodon is a research command line tool to extract high accuracy modified base and sequence variant calls from raw nanopore reads by a…☆204May 4, 2023Updated 3 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Methylation Phasing for Nanopore Sequencing☆51Mar 5, 2023Updated 3 years ago
- Plotting tools for nanopore methylation data☆96Updated this week
- Signal-level algorithms for MinION data☆601Aug 5, 2023Updated 3 years ago
- SquiggleKit: A toolkit for manipulating nanopore signal data☆130Feb 16, 2024Updated 2 years ago
- Automatic DNA methylation detection from nanopore tools and their consensus model☆77May 22, 2023Updated 3 years ago
- A python program to call methylation (m6A in DNA) from nanopore signal data☆46Jun 24, 2021Updated 5 years ago
- Research release basecalling models and configurations☆121Sep 7, 2026Updated last month
- Detection of RNA modifications from Oxford Nanopore direct RNA sequencing reads (Liu*, Begik* et al., Nature Comm 2019)☆119Mar 2, 2026Updated 8 months ago
- Ultra-fast methylation calling and event alignment tool for nanopore sequencing data (supports CUDA acceleration)☆166Aug 21, 2026Updated 2 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆31Jul 3, 2023Updated 3 years ago
- Flip-flop basecaller for Oxford Nanopore reads☆97Jan 13, 2022Updated 4 years ago
- Methylation/modified base calling separated from basecalling.☆189Sep 17, 2024Updated 2 years ago
- Detecting methylation using signal-level features from Nanopore sequencing reads of plants☆68Aug 12, 2026Updated 2 months ago
- ☆10Mar 11, 2025Updated last year
- ☆31Feb 5, 2021Updated 5 years ago
- Variant calling tool for long-read sequencing data☆119Mar 19, 2025Updated last year
- Training models for basecalling Oxford Nanopore reads☆116Jan 13, 2022Updated 4 years ago
- Oxford Nanopore Technologies fast5 API software☆154Feb 27, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- NANOME pipeline (Nanopore long-read sequencing consensus DNA methylation detection method and pipeline)☆33Mar 13, 2026Updated 7 months ago
- VBZ compression plugin for nanopore signal data☆44Apr 7, 2025Updated last year
- A PyTorch Basecaller for Oxford Nanopore Reads☆435Feb 20, 2026Updated 8 months ago
- Extract modifed base call information from Guppy Fast5 files.☆14Mar 28, 2022Updated 4 years ago
- Dynamic time warping of Oxford Nanopore squiggle data to characterize tandem repeats.☆32Jul 2, 2020Updated 6 years ago
- Clair: Exploring the limit of using deep neural network on pileup data for germline variant calling☆105Sep 1, 2022Updated 4 years ago
- HMM-HDP models for MinION signal alignments☆47Apr 10, 2017Updated 9 years ago
- ☆52Jun 25, 2024Updated 2 years ago
- ☆85Mar 3, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Neural-network consensus polishing and variant calling for Oxford Nanopore sequencing data☆528May 20, 2026Updated 5 months ago
- NanoMod: a computational tool to detect DNA modifications using Nanopore long-read sequencing data☆37Feb 2, 2022Updated 4 years ago
- Data and analysis for NA12878 genome on nanopore☆413Nov 22, 2022Updated 3 years ago
- NanoReviser: An Error-correction Tool for Nanopore Sequencing Based on a Deep Learning Algorithm☆27May 9, 2024Updated 2 years ago
- nanodisco: a toolbox for discovering and exploiting multiple types of DNA methylation from individual bacteria and microbiomes using nano…☆74May 20, 2022Updated 4 years ago
- A short analysis of Oxford Nanopore consensus accuracy for bacterial genome assemblies☆60Aug 6, 2019Updated 7 years ago
- A segmentation toolkit for segment the Nanopore RNA signal.☆20Feb 18, 2025Updated last year